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d-QPSO: A Quantum-Behaved Particle Swarm Technique for Finding D-Optimal Designs With Discrete and Continuous Factors and a Binary Response
Identifying optimal designs for generalized linear models with a binary response can be a challengingtask, especially when there are both discrete and continuous independent factors in the model. Theoreticalresults rarely exist for such models, and for the handful that do, they usually come with restrictive assumptions.In this article, we propose the d-QPSO algorithm, a modified version of quantum-behaved particleswarm optimization, to find a variety of D-optimal approximate and exact designs for experiments withdiscrete and continuous factors and a binary response. We show that the d-QPSO algorithm can efficientlyfind locally D-optimal designs even for experiments with a large number of factors and robust pseudo-Bayesian designs when nominal values for the model parameters are not available. Additionally, we investigaterobustness properties of the d-QPSO algorithm-generated designs to variousmodel assumptions andprovide real applications to design a bio-plastics odor removal experiment, an electronic static experiment,and a 10-factor car refueling experiment. Supplementary materials for the article are available online
Inferring the dynamics of underdamped stochastic systems
Many complex systems, ranging from migrating cells to animal groups, exhibit
stochastic dynamics described by the underdamped Langevin equation. Inferring
such an equation of motion from experimental data can provide profound insight
into the physical laws governing the system. Here, we derive a principled
framework to infer the dynamics of underdamped stochastic systems from
realistic experimental trajectories, sampled at discrete times and subject to
measurement errors. This framework yields an operational method, Underdamped
Langevin Inference (ULI), which performs well on experimental trajectories of
single migrating cells and in complex high-dimensional systems, including
flocks with Viscek-like alignment interactions. Our method is robust to
experimental measurement errors, and includes a self-consistent estimate of the
inference error
Active Brownian Particles. From Individual to Collective Stochastic Dynamics
We review theoretical models of individual motility as well as collective
dynamics and pattern formation of active particles. We focus on simple models
of active dynamics with a particular emphasis on nonlinear and stochastic
dynamics of such self-propelled entities in the framework of statistical
mechanics. Examples of such active units in complex physico-chemical and
biological systems are chemically powered nano-rods, localized patterns in
reaction-diffusion system, motile cells or macroscopic animals. Based on the
description of individual motion of point-like active particles by stochastic
differential equations, we discuss different velocity-dependent friction
functions, the impact of various types of fluctuations and calculate
characteristic observables such as stationary velocity distributions or
diffusion coefficients. Finally, we consider not only the free and confined
individual active dynamics but also different types of interaction between
active particles. The resulting collective dynamical behavior of large
assemblies and aggregates of active units is discussed and an overview over
some recent results on spatiotemporal pattern formation in such systems is
given.Comment: 161 pages, Review, Eur Phys J Special-Topics, accepte
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