Applying an abstract data structure description approach to parallelizing scientific pointer programs

Even though impressive progress has been made in the area of parallelizing scientific programs with arrays, the application of similar techniques to programs with pointer data structures has remained difficult. Unlike arrays which have a small number of well-defined properties that can be utilized by a parallelizing compiler, pointer data structures are used to implement a wide variety of structures that exhibit a much more diverse set of properties. The complexity and diversity of such properties means that, in general, scientific programs with pointer data structures cannot be effectively analyzed by an optimizing and parallelizing compiler.In order to provide a system in which the compiler can fully utilize the properties of different types of pointer data structures, we have developed a mechanism for the Abstract Description of Data Structures (ADDS). With our approach, the programmer can explicitly describe important properties such as dimensionality of the pointer data structure, independence of dimensions, and direction of traversal. These abstract descriptions of pointer data structures are then used by the compiler to guide analysis, optimization, and parallelization.In this paper we summarize the ADDS approach through the use of numerous examples of data structures used in scientific computations, we illustrate how such declarations are natural and non-tedious to specify, and we show how the ADDS declarations can be used to improve compile-time analysis. In order to demonstrate the viability of our approach, we show how such techniques can be used to parallelize an important class of scientific codes which naturally use recursive pointer data structures. In particular, we use our approach to develop the parallelization of an N-body simulation that is based on a relatively complicated pointer data structure, and we report the speedup results for a Sequent multiprocessor

Compilation techniques for irregular problems on parallel machines

Massively parallel computers have ushered in the era of teraflop computing. Even though large and powerful machines are being built, they are used by only a fraction of the computing community. The fundamental reason for this situation is that parallel machines are difficult to program. Development of compilers that automatically parallelize programs will greatly increase the use of these machines.;A large class of scientific problems can be categorized as irregular computations. In this class of computation, the data access patterns are known only at runtime, creating significant difficulties for a parallelizing compiler to generate efficient parallel codes. Some compilers with very limited abilities to parallelize simple irregular computations exist, but the methods used by these compilers fail for any non-trivial applications code.;This research presents development of compiler transformation techniques that can be used to effectively parallelize an important class of irregular programs. A central aim of these transformation techniques is to generate codes that aggressively prefetch data. Program slicing methods are used as a part of the code generation process. In this approach, a program written in a data-parallel language, such as HPF, is transformed so that it can be executed on a distributed memory machine. An efficient compiler runtime support system has been developed that performs data movement and software caching

On Extracting Course-Grained Function Parallelism from C Programs

To efficiently utilize the emerging heterogeneous multi-core architecture, it is essential to exploit the inherent coarse-grained parallelism in applications. In addition to data parallelism, applications like telecommunication, multimedia, and gaming can also benefit from the exploitation of coarse-grained function parallelism. To exploit coarse-grained function parallelism, the common wisdom is to rely on programmers to explicitly express the coarse-grained data-flow between coarse-grained functions using data-flow or streaming languages. This research is set to explore another approach to exploiting coarse-grained function parallelism, that is to rely on compiler to extract coarse-grained data-flow from imperative programs. We believe imperative languages and the von Neumann programming model will still be the dominating programming languages programming model in the future. This dissertation discusses the design and implementation of a memory data-flow analysis system which extracts coarse-grained data-flow from C programs. The memory data-flow analysis system partitions a C program into a hierarchy of program regions. It then traverses the program region hierarchy from bottom up, summarizing the exposed memory access patterns for each program region, meanwhile deriving a conservative producer-consumer relations between program regions. An ensuing top-down traversal of the program region hierarchy will refine the producer-consumer relations by pruning spurious relations. We built an in-lining based prototype of the memory data-flow analysis system on top of the IMPACT compiler infrastructure. We applied the prototype to analyze the memory data-flow of several MediaBench programs. The experiment results showed that while the prototype performed reasonably well for the tested programs, the in-lining based implementation may not efficient for larger programs. Also, there is still room in improving the effectiveness of the memory data-flow analysis system. We did root cause analysis for the inaccuracy in the memory data-flow analysis results, which provided us insights on how to improve the memory data-flow analysis system in the future

A pattern language for parallelizing irregular algorithms

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para obtenção do grau de Mestre em Engenharia InformáticaIn irregular algorithms, data set’s dependences and distributions cannot be statically predicted. This class of algorithms tends to organize computations in terms of data locality instead of parallelizing control in multiple threads. Thus, opportunities for exploiting parallelism vary dynamically, according to how the algorithm changes data dependences. As such, effective parallelization of such algorithms requires new approaches that account for that dynamic nature. This dissertation addresses the problem of building efficient parallel implementations of irregular algorithms by proposing to extract, analyze and document patterns of concurrency and parallelism present in the Galois parallelization framework for irregular algorithms. Patterns capture formal representations of a tangible solution to a problem that arises in a well defined context within a specific domain. We document the said patterns in a pattern language, i.e., a set of inter-dependent patterns that compose well-documented template solutions that can be reused whenever a certain problem arises in a well-known context

Run-time optimization of adaptive irregular applications

Compared to traditional compile-time optimization, run-time optimization could offer significant performance improvements when parallelizing and optimizing adaptive irregular applications, because it performs program analysis and adaptive optimizations during program execution. Run-time techniques can succeed where static techniques fail because they exploit the characteristics of input data, programs' dynamic behaviors, and the underneath execution environment. When optimizing adaptive irregular applications for parallel execution, a common observation is that the effectiveness of the optimizing transformations depends on programs' input data and their dynamic phases. This dissertation presents a set of run-time optimization techniques that match the characteristics of programs' dynamic memory access patterns and the appropriate optimization (parallelization) transformations. First, we present a general adaptive algorithm selection framework to automatically and adaptively select at run-time the best performing, functionally equivalent algorithm for each of its execution instances. The selection process is based on off-line automatically generated prediction models and characteristics (collected and analyzed dynamically) of the algorithm's input data, In this dissertation, we specialize this framework for automatic selection of reduction algorithms. In this research, we have identified a small set of machine independent high-level characterization parameters and then we deployed an off-line, systematic experiment process to generate prediction models. These models, in turn, match the parameters to the best optimization transformations for a given machine. The technique has been evaluated thoroughly in terms of applications, platforms, and programs' dynamic behaviors. Specifically, for the reduction algorithm selection, the selected performance is within 2% of optimal performance and on average is 60% better than "Replicated Buffer," the default parallel reduction algorithm specified by OpenMP standard. To reduce the overhead of speculative run-time parallelization, we have developed an adaptive run-time parallelization technique that dynamically chooses effcient shadow structures to record a program's dynamic memory access patterns for parallelization. This technique complements the original speculative run-time parallelization technique, the LRPD test, in parallelizing loops with sparse memory accesses. The techniques presented in this dissertation have been implemented in an optimizing research compiler and can be viewed as effective building blocks for comprehensive run-time optimization systems, e.g., feedback-directed optimization systems and dynamic compilation systems

Percolation-based compiling for evaluation of parallelism and hardware design trade-offs

This thesis investigates parallelism and hardware design trade-offs of parallel and pipelined architectures. To explore these trade-offs we developed a retargetable compiler based on a set of powerful code transformations called Percolation Scheduling (PS) that map programs with real-time constraints and/or massive time requirements onto synchronous, parallel, high-performance or semi-custom architectures.High-performance is achieved through extraction of application inherent fine-grain parallelism and the use of a suitable architecture. Exploiting fine-grain parallelism is a critical part of exploiting all of the parallelism available in a given program, particularly since highly irregular forms of parallelism are often not visible at coarser levels and since the use of low-level parallelism has a multiplicative effect on the overall performance.To extract substantial parallelism from both the hardware and the compiler, we use a clean, highly parallel VLIW-like architecture that is synchronous, has multiple functional units and has a single program counter. The use of a hazard-free and homogeneous architecture does not result only in a better VLSI design but also considerably increases the compiler's ability to produce better code. To further enhance parallelism we modified the uni-cycle VLIW model and extended the transformations such that pipelined units that provide extra parallelism are used.Another approach presented is of resource constrained scheduling (RCS). Since the RCS problem is known to be NP-hard, in practice it may be solved only by a heuristic approach. We argue that using the heuristic after extraction of the unlimited-resources schedule may yield better results than if the heuristic has been applied at the beginning of the scheduling process.Through a series of benchmarks we evaluate hardware design trade-offs and show that speed-ups on average of one order of magnitude are feasible with sufficient functional units. However, when resources are limited we show that the number of functional units needed may be optimized for a particular suite of application programs

Strategies for automatic planning: A collection of ideas

The main goal of the Jet Propulsion Laboratory (JPL) is to obtain science return from interplanetary probes. The uplink process is concerned with communicating commands to a spacecraft in order to achieve science objectives. There are two main parts to the development of the command file which is sent to a spacecraft. First, the activity planning process integrates the science requests for utilization of spacecraft time into a feasible sequence. Then the command generation process converts the sequence into a set of commands. The development of a feasible sequence plan is an expensive and labor intensive process requiring many months of effort. In order to save time and manpower in the uplink process, automation of parts of this process is desired. There is an ongoing effort to develop automatic planning systems. This has met with some success, but has also been informative about the nature of this effort. It is now clear that innovative techniques and state-of-the-art technology will be required in order to produce a system which can provide automatic sequence planning. As part of this effort to develop automatic planning systems, a survey of the literature, looking for known techniques which may be applicable to our work was conducted. Descriptions of and references for these methods are given, together with ideas for applying the techniques to automatic planning

PARALLELIZING TIME-SERIES SESSION DATA ANALYSIS WITH A TYPE-ERASURE BASED DSEL

The Science Information Network (SINET) is a Japanese academic backbone network.  SINET consists of more than 800 universities and research institutions.  In the operation of a huge academic backbone network, more flexible querying technology is required to cope with massive time series session data and analysis of sophisticated cyber-attacks. This paper proposes a parallelizing DSEL (Domain Specific Embedded Language) processing for huge time-series session data. In our DESL, the function object is implemented by type erasure for constructing internal DSL for processing time-series data. Type erasure enables our parser to store function pointer and function object into the same *void type with class templates. We apply to scatter/gather pattern for concurrent DSEL parsing. Each thread parses DSEL to extract the tuple timestamp, source IP, and destination IP in the gather phase. In the scattering phase, we use a concurrent hash map to handle multiple thread outputs with our DSEL. In the experiment, we have measured the elapsed time in parsing and inserting IPv4 address and timestamp data format ranging from 1,000 to 50,000 lines with 24-row items. We have also measured CPU idle time in processing 100,000,000 lines of session data with 5, 10 and 20 multiple threads. It has been turned out that the proposed method can work in feasible computing time in both cases

Structured parallelism discovery with hybrid static-dynamic analysis and evaluation technique

Parallel computer architectures have dominated the computing landscape for the past two decades; a trend that is only expected to continue and intensify, with increasing specialization and heterogeneity. This creates huge pressure across the software stack to produce programming languages, libraries, frameworks and tools which will efficiently exploit the capabilities of parallel computers, not only for new software, but also revitalizing existing sequential code. Automatic parallelization, despite decades of research, has had limited success in transforming sequential software to take advantage of efficient parallel execution. This thesis investigates three approaches that use commutativity analysis as the enabler for parallelization. This has the potential to overcome limitations of traditional techniques. We introduce the concept of liveness-based commutativity for sequential loops. We examine the use of a practical analysis utilizing liveness-based commutativity in a symbolic execution framework. Symbolic execution represents input values as groups of constraints, consequently deriving the output as a function of the input and enabling the identification of further program properties. We employ this feature to develop an analysis and discern commutativity properties between loop iterations. We study the application of this approach on loops taken from real-world programs in the OLDEN and NAS Parallel Benchmark (NPB) suites, and identify its limitations and related overheads. Informed by these findings, we develop Dynamic Commutativity Analysis (DCA), a new technique that leverages profiling information from program execution with specific input sets. Using profiling information, we track liveness information and detect loop commutativity by examining the code’s live-out values. We evaluate DCA against almost 1400 loops of the NPB suite, discovering 86% of them as parallelizable. Comparing our results against dependence-based methods, we match the detection efficacy of two dynamic and outperform three static approaches, respectively. Additionally, DCA is able to automatically detect parallelism in loops which iterate over Pointer-Linked Data Structures (PLDSs), taken from wide range of benchmarks used in the literature, where all other techniques we considered failed. Parallelizing the discovered loops, our methodology achieves an average speedup of 3.6× across NPB (and up to 55×) and up to 36.9× for the PLDS-based loops on a 72-core host. We also demonstrate that our methodology, despite relying on specific input values for profiling each program, is able to correctly identify parallelism that is valid for all potential input sets. Lastly, we develop a methodology to utilize liveness-based commutativity, as implemented in DCA, to detect latent loop parallelism in the shape of patterns. Our approach applies a series of transformations which subsequently enable multiple applications of DCA over the generated multi-loop code section and match its loop commutativity outcomes against the expected criteria for each pattern. Applying our methodology on sets of sequential loops, we are able to identify well-known parallel patterns (i.e., maps, reduction and scans). This extends the scope of parallelism detection to loops, such as those performing scan operations, which cannot be determined as parallelizable by simply evaluating liveness-based commutativity conditions on their original form