2,173 research outputs found
Improving Performance of Iterative Methods by Lossy Checkponting
Iterative methods are commonly used approaches to solve large, sparse linear
systems, which are fundamental operations for many modern scientific
simulations. When the large-scale iterative methods are running with a large
number of ranks in parallel, they have to checkpoint the dynamic variables
periodically in case of unavoidable fail-stop errors, requiring fast I/O
systems and large storage space. To this end, significantly reducing the
checkpointing overhead is critical to improving the overall performance of
iterative methods. Our contribution is fourfold. (1) We propose a novel lossy
checkpointing scheme that can significantly improve the checkpointing
performance of iterative methods by leveraging lossy compressors. (2) We
formulate a lossy checkpointing performance model and derive theoretically an
upper bound for the extra number of iterations caused by the distortion of data
in lossy checkpoints, in order to guarantee the performance improvement under
the lossy checkpointing scheme. (3) We analyze the impact of lossy
checkpointing (i.e., extra number of iterations caused by lossy checkpointing
files) for multiple types of iterative methods. (4)We evaluate the lossy
checkpointing scheme with optimal checkpointing intervals on a high-performance
computing environment with 2,048 cores, using a well-known scientific
computation package PETSc and a state-of-the-art checkpoint/restart toolkit.
Experiments show that our optimized lossy checkpointing scheme can
significantly reduce the fault tolerance overhead for iterative methods by
23%~70% compared with traditional checkpointing and 20%~58% compared with
lossless-compressed checkpointing, in the presence of system failures.Comment: 14 pages, 10 figures, HPDC'1
Evaluating the Impact of SDC on the GMRES Iterative Solver
Increasing parallelism and transistor density, along with increasingly
tighter energy and peak power constraints, may force exposure of occasionally
incorrect computation or storage to application codes. Silent data corruption
(SDC) will likely be infrequent, yet one SDC suffices to make numerical
algorithms like iterative linear solvers cease progress towards the correct
answer. Thus, we focus on resilience of the iterative linear solver GMRES to a
single transient SDC. We derive inexpensive checks to detect the effects of an
SDC in GMRES that work for a more general SDC model than presuming a bit flip.
Our experiments show that when GMRES is used as the inner solver of an
inner-outer iteration, it can "run through" SDC of almost any magnitude in the
computationally intensive orthogonalization phase. That is, it gets the right
answer using faulty data without any required roll back. Those SDCs which it
cannot run through, get caught by our detection scheme
Resilience in Numerical Methods: A Position on Fault Models and Methodologies
Future extreme-scale computer systems may expose silent data corruption (SDC)
to applications, in order to save energy or increase performance. However,
resilience research struggles to come up with useful abstract programming
models for reasoning about SDC. Existing work randomly flips bits in running
applications, but this only shows average-case behavior for a low-level,
artificial hardware model. Algorithm developers need to understand worst-case
behavior with the higher-level data types they actually use, in order to make
their algorithms more resilient. Also, we know so little about how SDC may
manifest in future hardware, that it seems premature to draw conclusions about
the average case. We argue instead that numerical algorithms can benefit from a
numerical unreliability fault model, where faults manifest as unbounded
perturbations to floating-point data. Algorithms can use inexpensive "sanity"
checks that bound or exclude error in the results of computations. Given a
selective reliability programming model that requires reliability only when and
where needed, such checks can make algorithms reliable despite unbounded
faults. Sanity checks, and in general a healthy skepticism about the
correctness of subroutines, are wise even if hardware is perfectly reliable.Comment: Position Pape
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