Progress in Remote Sensing of Photosynthetic Activity over the Amazon Basin

Although quantifying the massive exchange of carbon that takes place over the Amazon Basin remains a challenge, progress is being made as the remote sensing community moves from using traditional, reflectance-based vegetation indices, such as the Normalized Difference Vegetation Index (NDVI), to the more functional Photochemical Reflectance Index (PRI). This new index, together with satellite-derived estimates of canopy light interception and Sun-Induced Fluorescence (SIF), provide improved estimates of Gross Primary Production (GPP). This paper traces the development of these new approaches, compares the results of their analyses from multiple years of data acquired across the Amazon Basin and suggests further improvements in instrument design, data acquisition and processing. We demonstrated that our estimates of PRI are in generally good agreement with eddy-flux tower measurements of photosynthetic light use efficiency (epsilon) at four sites in the Amazon Basin: r(exp 2) values ranged from 0.37 to 0.51 for northern flux sites and to 0.78for southern flux sites. This is a significant advance over previous approaches seeking to establish a link between global-scale photosynthetic activity and remotely-sensed data. When combined with measurements of Sun-Induced Fluorescence (SIF), PRI provides realistic estimates of seasonal variation in photosynthesis over the Amazon that relate well to the wet and dry seasons. We anticipate that our findings will steer the development of improved approaches to estimate photosynthetic activity over the tropics

Parallel Seasonal Patterns of Photosynthesis, Fluorescence, and Reflectance Indices in Boreal Trees

Tree species in the boreal forest cycle between periods of active growth and dormancy alter their photosynthetic processes in response to changing environmental conditions. For deciduous species, these changes are readily visible, while evergreen species have subtler foliar changes during seasonal transitions. In this study, we used remotely sensed optical indices to observe seasonal changes in photosynthetic activity, or photosynthetic phenology, of six boreal tree species. We evaluated the normalized difference vegetation index (NDVI), the photochemical reflectance index (PRI), the chlorophyll/carotenoid index (CCI), and steady-state chlorophyll fluorescence (FS) as a measure of solar-induced fluorescence (SIF), and compared these optical metrics to gas exchange to determine their efficacy in detecting seasonal changes in plant photosynthetic activity. The NDVI and PRI exhibited complementary responses. The NDVI paralleled photosynthetic phenology in deciduous species, but not in evergreens. The PRI closely paralleled photosynthetic activity in evergreens, but less so in deciduous species. The CCI and FS tracked photosynthetic phenology in both deciduous and evergreen species. The seasonal patterns of optical metrics and photosynthetic activity revealed subtle differences across and within functional groups. With the CCI and fluorescence becoming available from satellite sensors, they offer new opportunities for assessing photosynthetic phenology, particularly for evergreen species, which have been difficult to assess with previous methods

Sun-induced chlorophyll fluorescence and photochemical reflectance index improve remote-sensing gross primary production estimates under varying nutrient availability in a typical Mediterranean savanna ecosystem

Este estudio investiga las diferentes actuaciones de ópticas sobre los índices para estimar la producción primaria bruta (GPP) del estrato herbáceo de una sabana mediterránea con diferente disponibilidad de nitrógeno (N) y de fósforo (P). La fluorescencia de la clorofila inducida por el sol sobre el rendimiento calculado en 760 nm (FY760), escala de índice de reflectancia fotoquímica (sPRI), MERIS terrestre (índice de clorofila MTCI) y el índice de vegetación de diferencia normalizada (NDVI) fueron calculadas desde cerca de la superficie y las mediciones de espectroscopia de campo recolectados se hicieron utilizando espectrómetros de alta resolución espectral, que abarcan las regiones del infrarrojo cercano visible. La GPP fue medida utilizando cámaras de dosel en las mismas localidades muestreadas por los espectrómetros. Hemos probado si la eficiencia del uso de los modelos de luz (LUE) impulsados por cantidades de teledetección (RSMs) pueden hacer un mejor seguimiento de los cambios en la GPP causada por fuentes de nutrientes en comparación con aquellos impulsados exclusivamente por datos meteorológicos (MM). En particular, comparamos los espectáculos de diferentes formulaciones de RSM -basándose en la utilización de FY760 o sPRI como proxy para LUE y NDVI MTCI o como una fracción de la radiación fotosintéticamente activa absorbida (APAR f)- con las clásicas de MM. Los resultados mostraron mayor GPP en la N -parcelas experimentales fertilizadas durante el período de crecimiento. Estas diferencias en la GPP desaparecieron en el período de secado, cuando los efectos de la senescencia enmascarada contiene diferencias de potencial debido a la planta N. Por consiguiente, MTCI estaba estrechamente relacionada con la media de la planta N, contenida a través de tratamientos (r2 D 0:86, p < 0:01), porque estaba mal relacionados con GPP (r2 D 0:45, p < 0:05). Por el contrario sPRI y FY760 se correlacionaban bien con GPP durante todo el período de medición. Los resultados revelaron que la relación entre el GPP y FY760 no es única en los tratamientos, pero no se ve afectada por la disponibilidad de N. Los resultados de un análisis de validación cruzada mostró que el MM (AICcv D 127, MEcv D 0:879) superó a RSM (AICcv D 140, MEcv D 0:8737,) cuando la humedad del suelo fue utilizada para restringir la dinámica estacional de LUE. Sin embargo, el análisis residual demostró que las predicciones de GPP con MM son inexactas cuando no revela explícitamente unas variables climáticas en cambios relacionados con el parámetro de nutrientes LUE. Estos resultados sugieren que RSM es un medio valioso para diagnosticar los efectos inducidos por los nutrientes en la actividad fotosintética.This study investigates the performances of different optical indices to estimate gross primary production (GPP) of herbaceous stratum in a Mediterranean savanna with different nitrogen (N) and phosphorous (P) availability. Sun-induced chlorophyll fluorescence yield computed at 760 nm (Fy760), scaled photochemical reflectance index (sPRI), MERIS terrestrial-chlorophyll index (MTCI) and normalized difference vegetation index (NDVI) were computed from near-surface field spectroscopy measurements collected using high spectral resolution spectrometers covering the visible near-infrared regions. GPP was measured using canopy chambers on the same locations sampled by the spectrometers. We tested whether light-use efficiency (LUE) models driven by remote-sensing quantities (RSMs) can better track changes in GPP caused by nutrient supplies compared to those driven exclusively by meteorological data (MM). Particularly, we compared the performances of different RSM formulations – relying on the use of Fy760 or sPRI as a proxy for LUE and NDVI or MTCI as a fraction of absorbed photosynthetically active radiation (f APAR) – with those of classical MM. Results showed higher GPP in the N-fertilized experimental plots during the growing period. These differences in GPP disappeared in the drying period when senescence effects masked out potential differences due to plant N content. Consequently, although MTCI was closely related to the mean of plant N content across treatments (r2 D 0:86, p < 0:01), it was poorly related to GPP (r2 D 0:45, p < 0:05). On the contrary sPRI and Fy760 correlated well with GPP during the whole measurement period. Results revealed that the relationship between GPP and Fy760 is not unique across treatments, but it is affected by N availability. Results from a cross-validation analysis showed that MM (AICcv D 127, MEcv D 0:879) outperformed RSM (AICcv D 140, MEcv D 0:8737) when soil moisture was used to constrain the seasonal dynamic of LUE. However, residual analyses demonstrated that GPP predictions with MM are inaccurate whenever no climatic variable explicitly reveals nutrient-related changes in the LUE parameter. These results suggest that RSM is a valuable means to diagnose nutrient-induced effects on the photosynthetic activity.Trabajo financiado por: Alexander von Humboldt Foundation y la Max Planck Research AwardpeerReviewe

Spectral Bio-indicator Simulations for Tracking Photosynthetic Activities in a Corn Field

Accurate assessment of vegetation canopy optical properties plays a critical role in monitoring natural and managed ecosystems under environmental changes. In this context, radiative transfer (RT) models simulating vegetation canopy reflectance have been demonstrated to be a powerful tool for understanding and estimating spectral bio-indicators. In this study, two narrow band spectroradiometers were utilized to acquire observations over corn canopies for two summers. These in situ spectral data were then used to validate a two-layer Markov chain-based canopy reflectance model for simulating the Photochemical Reflectance Index (PRI), which has been widely used in recent vegetation photosynthetic light use efficiency (LUE) studies. The in situ PRI derived from narrow band hyperspectral reflectance exhibited clear responses to: 1) viewing geometry which affects the asset of light environment; and 2) seasonal variation corresponding to the growth stage. The RT model (ACRM) successfully simulated the responses to the variable viewing geometry. The best simulations were obtained when the model was set to run in the two layer mode using the sunlit leaves as the upper layer and shaded leaves as the lower layer. Simulated PRI values yielded much better correlations to in situ observations when the cornfield was dominated by green foliage during the early growth, vegetative and reproductive stages (r = 0.78 to 0.86) than in the later senescent stage (r = 0.65). Further sensitivity analyses were conducted to show the important influences of leaf area index (LAI) and the sunlit/shaded ratio on PRI observations

Decomposing reflectance spectra to track gross primary production in a subalpine evergreen forest

Photosynthesis by terrestrial plants represents the majority of CO₂ uptake on Earth, yet it is difficult to measure directly from space. Estimation of gross primary production (GPP) from remote sensing indices represents a primary source of uncertainty, in particular for observing seasonal variations in evergreen forests. Recent vegetation remote sensing techniques have highlighted spectral regions sensitive to dynamic changes in leaf/needle carotenoid composition, showing promise for tracking seasonal changes in photosynthesis of evergreen forests. However, these have mostly been investigated with intermittent field campaigns or with narrow-band spectrometers in these ecosystems. To investigate this potential, we continuously measured vegetation reflectance (400–900 nm) using a canopy spectrometer system, PhotoSpec, mounted on top of an eddy-covariance flux tower in a subalpine evergreen forest at Niwot Ridge, Colorado, USA. We analyzed driving spectral components in the measured canopy reflectance using both statistical and process-based approaches. The decomposed spectral components co-varied with carotenoid content and GPP, supporting the interpretation of the photochemical reflectance index (PRI) and the chlorophyll/carotenoid index (CCI). Although the entire 400–900 nm range showed additional spectral changes near the red edge, it did not provide significant improvements in GPP predictions. We found little seasonal variation in both normalized difference vegetation index (NDVI) and the near-infrared vegetation index (NIRv) in this ecosystem. In addition, we quantitatively determined needle-scale chlorophyll-to-carotenoid ratios as well as anthocyanin contents using full-spectrum inversions, both of which were tightly correlated with seasonal GPP changes. Reconstructing GPP from vegetation reflectance using partial least-squares regression (PLSR) explained approximately 87 % of the variability in observed GPP. Our results linked the seasonal variation in reflectance to the pool size of photoprotective pigments, highlighting all spectral locations within 400–900 nm associated with GPP seasonality in evergreen forests

Dynamics of sun-induced chlorophyll fluorescence and reflectance to detect stress-induced variations in canopy photosynthesis

Passive measurement of sun-induced chlorophyll fluorescence (F) represents the most promising tool to quantify changes in photosynthetic functioning on a large scale. However, the complex relationship between this signal and other photosynthesis-related processes restricts its interpretation under stress conditions. To address this issue, we conducted a field campaign by combining daily airborne and ground-based measurements of F (normalized to photosynthetically active radiation), reflectance and surface temperature and related the observed changes to stress-induced variations in photosynthesis. A lawn carpet was sprayed with different doses of the herbicide Dicuran. Canopy-level measurements of gross primary productivity indicated dosage-dependent inhibition of photosynthesis by the herbicide. Dosage-dependent changes in normalized F were also detected. After spraying, we first observed a rapid increase in normalized F and in the Photochemical Reflectance Index, possibly due to the blockage of electron transport by Dicuran and the resultant impairment of xanthophyll-mediated non-photochemical quenching. This initial increase was followed by a gradual decrease in both signals, which coincided with a decline in pigment-related reflectance indices. In parallel, we also detected a canopy temperature increase after the treatment. These results demonstrate the potential of using F coupled with relevant reflectance indices to estimate stress-induced changes in canopy photosynthesis