2,018 research outputs found
Computer-aided detection and diagnosis of breast cancer in 2D and 3D medical imaging through multifractal analysis
This Thesis describes the research work performed in the scope of a doctoral research program
and presents its conclusions and contributions. The research activities were carried on in the
industry with Siemens S.A. Healthcare Sector, in integration with a research team.
Siemens S.A. Healthcare Sector is one of the world biggest suppliers of products, services and
complete solutions in the medical sector. The company offers a wide selection of diagnostic
and therapeutic equipment and information systems. Siemens products for medical imaging and
in vivo diagnostics include: ultrasound, computer tomography, mammography, digital breast tomosynthesis,
magnetic resonance, equipment to angiography and coronary angiography, nuclear
imaging, and many others.
Siemens has a vast experience in Healthcare and at the beginning of this project it was strategically
interested in solutions to improve the detection of Breast Cancer, to increase its competitiveness
in the sector.
The company owns several patents related with self-similarity analysis, which formed the background
of this Thesis. Furthermore, Siemens intended to explore commercially the computer-
aided automatic detection and diagnosis eld for portfolio integration. Therefore, with the
high knowledge acquired by University of Beira Interior in this area together with this Thesis,
will allow Siemens to apply the most recent scienti c progress in the detection of the breast
cancer, and it is foreseeable that together we can develop a new technology with high potential.
The project resulted in the submission of two invention disclosures for evaluation in Siemens
A.G., two articles published in peer-reviewed journals indexed in ISI Science Citation Index,
two other articles submitted in peer-reviewed journals, and several international conference
papers. This work on computer-aided-diagnosis in breast led to innovative software and novel
processes of research and development, for which the project received the Siemens Innovation
Award in 2012.
It was very rewarding to carry on such technological and innovative project in a socially sensitive
area as Breast Cancer.No cancro da mama a deteção precoce e o diagnóstico correto são de extrema importância na
prescrição terapêutica e caz e e ciente, que potencie o aumento da taxa de sobrevivência à
doença. A teoria multifractal foi inicialmente introduzida no contexto da análise de sinal e a
sua utilidade foi demonstrada na descrição de comportamentos siológicos de bio-sinais e até
na deteção e predição de patologias. Nesta Tese, três métodos multifractais foram estendidos
para imagens bi-dimensionais (2D) e comparados na deteção de microcalci cações em mamogramas.
Um destes métodos foi também adaptado para a classi cação de massas da mama, em
cortes transversais 2D obtidos por ressonância magnética (RM) de mama, em grupos de massas
provavelmente benignas e com suspeição de malignidade. Um novo método de análise multifractal
usando a lacunaridade tri-dimensional (3D) foi proposto para classi cação de massas da
mama em imagens volumétricas 3D de RM de mama. A análise multifractal revelou diferenças
na complexidade subjacente às localizações das microcalci cações em relação aos tecidos normais,
permitindo uma boa exatidão da sua deteção em mamogramas. Adicionalmente, foram
extraídas por análise multifractal características dos tecidos que permitiram identi car os casos
tipicamente recomendados para biópsia em imagens 2D de RM de mama. A análise multifractal
3D foi e caz na classi cação de lesões mamárias benignas e malignas em imagens 3D de RM de
mama. Este método foi mais exato para esta classi cação do que o método 2D ou o método
padrão de análise de contraste cinético tumoral. Em conclusão, a análise multifractal fornece
informação útil para deteção auxiliada por computador em mamogra a e diagnóstico auxiliado
por computador em imagens 2D e 3D de RM de mama, tendo o potencial de complementar a
interpretação dos radiologistas
An Optical Machine Vision System for Applications in Cytopathology
This paper discusses a new approach to the processes of object detection, recognition and classification in a digital image focusing on problem in Cytopathology. A unique self learning procedure is presented in order to incorporate expert knowledge. The classification method is based on the application of a set of features which includes fractal parameters such as the Lacunarity and Fourier dimension. Thus, the approach includes the characterisation of an object in terms of its fractal properties and texture characteristics. The principal issues associated with object recognition are presented which include the basic model and segmentation algorithms. The self-learning procedure for designing a decision making engine using fuzzy logic and membership function theory is also presented and a novel technique for the creation and extraction of information from a membership function considered. The methods discussed and the algorithms developed have a range of applications and in this work, we focus the engineering of a system for automating a Papanicolaou screening test
An Assessment of Fractal Characterization Methods for 1/f Processes with Application to the Analysis of Stride Interval Time Series
The time evolution and complex interactions of many nonlinear systems, such as in the
human body, result in fractal types of parameter outcomes that exhibit self similarity over long time scales by a power law in the frequency spectrum S(f) = 1/f. The scaling exponent can be interpreted as the degree of fractal characteristic and thus as a "biomarker" of relative health and decline. This thesis presents a thorough numerical analysis of fractal characterization techniques with specific consideration given to experimentally measured gait stride interval time series. The ideal fractal signals generated in the numerical analysis are constrained under varying lengths and biases indicative of a range of physiologically conceivable fractal signals. This analysis is to complement previous investigations of fractal characteristics in healthy and pathological gait stride interval time series, with which this study is compared. The comparative numerical analysis and experimental applications provide a thorough basis for determining an appropriate and robust method for measuring and comparing a physiologically meaningful biomarker, the spectral index. In consideration of the constraints in applications, the significant drawbacks of proposed time domain methods are noted, and it is concluded that time-scale domain wavelet methods can provide a reasonably consistent and accurate biomarker technique for these fractal time series
Review and classification of variability analysis techniques with clinical applications
Analysis of patterns of variation of time-series, termed variability analysis, represents a rapidly evolving discipline with increasing applications in different fields of science. In medicine and in particular critical care, efforts have focussed on evaluating the clinical utility of variability. However, the growth and complexity of techniques applicable to this field have made interpretation and understanding of variability more challenging. Our objective is to provide an updated review of variability analysis techniques suitable for clinical applications. We review more than 70 variability techniques, providing for each technique a brief description of the underlying theory and assumptions, together with a summary of clinical applications. We propose a revised classification for the domains of variability techniques, which include statistical, geometric, energetic, informational, and invariant. We discuss the process of calculation, often necessitating a mathematical transform of the time-series. Our aims are to summarize a broad literature, promote a shared vocabulary that would improve the exchange of ideas, and the analyses of the results between different studies. We conclude with challenges for the evolving science of variability analysis
Morphology-based multifractal estimation for texture segmentation
Author name used in this publication: (David) Dagan FengCentre for Multimedia Signal Processing, Department of Electronic and Information Engineering2005-2006 > Academic research: refereed > Publication in refereed journalVersion of RecordPublishe
Assessment of Dispersion and Bubble Entropy Measures for Enhancing Preterm Birth Prediction Based on Electrohysterographic Signals
[EN] One of the remaining challenges for the scientific-technical community is predicting preterm births, for which electrohysterography (EHG) has emerged as a highly sensitive prediction technique. Sample and fuzzy entropy have been used to characterize EHG signals, although they require optimizing many internal parameters. Both bubble entropy, which only requires one internal parameter, and dispersion entropy, which can detect any changes in frequency and amplitude, have been proposed to characterize biomedical signals. In this work, we attempted to determine the clinical value of these entropy measures for predicting preterm birth by analyzing their discriminatory capacity as an individual feature and their complementarity to other EHG characteristics by developing six prediction models using obstetrical data, linear and non-linear EHG features, and linear discriminant analysis using a genetic algorithm to select the features. Both dispersion and bubble entropy better discriminated between the preterm and term groups than sample, spectral, and fuzzy entropy. Entropy metrics provided complementary information to linear features, and indeed, the improvement in model performance by including other non-linear features was negligible. The best model performance obtained an F1-score of 90.1 ± 2% for testing the dataset. This model can easily be adapted to real-time applications, thereby contributing to the transferability of the EHG technique to clinical practice.This work was supported by the Spanish Ministry of Economy and Competitiveness, the European Regional Development Fund (MCIU/AEI/FEDER, UE RTI2018-094449-A-I00-AR), and by the Generalitat Valenciana (AICO/2019/220)Nieto Del-Amor, F.; Beskhani, R.; Ye Lin, Y.; Garcia-Casado, J.; Díaz-Martínez, MDA.; Monfort-Ortiz, R.; Diago-Almela, VJ.... (2021). Assessment of Dispersion and Bubble Entropy Measures for Enhancing Preterm Birth Prediction Based on Electrohysterographic Signals. Sensors. 21(18):1-17. https://doi.org/10.3390/s21186071S117211
An investigation with fractial geometry analysis of time series
Thesis (Master)--Izmir Institute of Technology, Materials Science and Engineering, Izmir, 2005Includes bibliographical references (leaves: 83-84)Text in English; Abstract: Turkish and Englishxiii,94 leavesIn this thesis, three kinds of fractal dimensions, correlation dimension, Hausdorff dimension and box-counting dimension were used to examine time series. To demonstrate the universality of the method, ECG (Electrocardiogram) time series were chosen. The ECG signals consisted of ECGs of three persons in four states for two applications. States are normal, walk, rapid walk and run. These three people are selected from the same age, and height group to minimize variations. First application was made for approximately 1000 samples of size of ECG signals and the second for the whole of the measured ECG signals. Fractal dimension measurements under different conditions were carried out to find out whether these dimensions could discriminate the states under question. A total of 24 ECG signals were measured to determine their corresponding fractal dimensions through the above-mentioned methods. It was expected that fractal dimension values would indicate the states related to the different activities of the persons. Results show that no direct link was found connecting a certain dimension to a certain activity in a consistent manner. Furthermore, no congruence was also found among the three dimensions that were employed. According to these results, it can be stated that fractal dimension values on their own may not be sufficient to identify distinct cases hidden in time series. Time series analysis may be facilitated when additional tools and methods are utilized as well as fractal dimensions at detecting telltale signs in signals of different states
New Method for Estimating Fractal Dimension in 3D Space and Its Application to Complex Surfaces
The concept of “surface modeling” generally describes the process of representing a physical or artificial surface by a geometric model, namely a mathematical expression. Among the existing techniques applied for the characterization of a surface, terrain modeling relates to the representation of the natural surface of the Earth. Cartographic terrain or relief models as three-dimensional representations of a part of the Earth's surface convey an immediate and direct impression of a landscape and are much easier to understand than two-dimensional models. This paper addresses a major problem in complex surface modeling and evaluation consisting in the characterization of their topography and comparison among different textures, which can be relevant in different areas of research. A new algorithm is presented that allows calculating the fractal dimension of images of complex surfaces. The method is used to characterize different surfaces and compare their characteristics. The proposed new mathematical method computes the fractal dimension of the 3D space with the average space component of Hurst exponent H, while the estimated fractal dimension is used to evaluate, compare and characterize complex surfaces that are relevant in different areas of research. Various surfaces with both methods were analyzed and the results were compared. The study confirms that with known coordinates of a surface, it is possible to describe its complex structure. The estimated fractal dimension is proved to be an ideal tool for measuring the complexity of the various surfaces considered
New method for estimating fractal dimension in 3d space and its application to complex surfaces
The concept of “surface modeling” generally describes the process of representing a physical or artificial surface by a
geometric model, namely a mathematical expression. Among the existing techniques applied for the characterization of a surface,
terrain modeling relates to the representation of the natural surface of the Earth. Cartographic terrain or relief models as threedimensional
representations of a part of the Earth's surface convey an immediate and direct impression of a landscape and are much
easier to understand than two-dimensional models. This paper addresses a major problem in complex surface modeling and
evaluation consisting in the characterization of their topography and comparison among different textures, which can be relevant in
different areas of research. A new algorithm is presented that allows calculating the fractal dimension of images of complex surfaces.
The method is used to characterize different surfaces and compare their characteristics. The proposed new mathematical method
computes the fractal dimension of the 3D space with the average space component of Hurst exponent H, while the estimated fractal
dimension is used to evaluate, compare and characterize complex surfaces that are relevant in different areas of research. Various
surfaces with both methods were analyzed and the results were compared. The study confirms that with known coordinates of a
surface, it is possible to describe its complex structure. The estimated fractal dimension is proved to be an ideal tool for measuring the
complexity of the various surfaces considered
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