113 research outputs found

    Hardware Accelerated Molecular Docking: A Survey

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    Surfing the optimization space of a multiple-GPU parallel implementation of a X-ray tomography reconstruction algorithm

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    The increasing popularity of massively parallel architectures based on accelerators have opened up the possibility of significantly improving the performance of X-ray computed tomography (CT) applications towards achieving real-time imaging. However, achieving this goal is a challenging process, as most CT applications have not been designed for exploiting the amount of parallelism existing in these architectures. In this paper we present the massively parallel implementation and optimization of Mangoose(++), a CT application for reconstructing 3D volumes from 20 images collected by scanners based on cone-beam geometry. The main contribution of this paper are the following. First, we develop a modular application design that allows to exploit the functional parallelism inside the application and to facilitate the parallelization of individual application phases. Second, we identify a set of optimizations that can be applied individually and in combination for optimally deploying the application on a massively parallel multi-GPU system. Third, we present a study of surfing the optimization space of the modularized application and demonstrate that a significant benefit can be obtained from employing the adequate combination of application optimizations. (C) 2014 Elsevier Inc. All rights reserved.This work was partially funded by the Spanish Ministry of Science and Technology under the grant TIN2010-16497, the AMIT project (CEN-20101014) from the CDTI-CENIT program, RECAVA-RETIC Network (RD07/0014/2009), projects TEC2010-21619-C04-01, TEC2011-28972-C02-01, and PI11/00616 from the Spanish Ministerio de Ciencia e Innovacion, ARTEMIS program (S2009/DPI-1802), from the Comunidad de Madrid

    Synthesis of reconfigurable high-performance multicore systems

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    Toward sustainable data centers: a comprehensive energy management strategy

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    Data centers are major contributors to the emission of carbon dioxide to the atmosphere, and this contribution is expected to increase in the following years. This has encouraged the development of techniques to reduce the energy consumption and the environmental footprint of data centers. Whereas some of these techniques have succeeded to reduce the energy consumption of the hardware equipment of data centers (including IT, cooling, and power supply systems), we claim that sustainable data centers will be only possible if the problem is faced by means of a holistic approach that includes not only the aforementioned techniques but also intelligent and unifying solutions that enable a synergistic and energy-aware management of data centers. In this paper, we propose a comprehensive strategy to reduce the carbon footprint of data centers that uses the energy as a driver of their management procedures. In addition, we present a holistic management architecture for sustainable data centers that implements the aforementioned strategy, and we propose design guidelines to accomplish each step of the proposed strategy, referring to related achievements and enumerating the main challenges that must be still solved.Peer ReviewedPostprint (author's final draft

    Energy and Performance: Management of Virtual Machines: Provisioning, Placement, and Consolidation

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    Cloud computing is a new computing paradigm that oïŹ€ers scalable storage and compute resources to users on demand through Internet. Public cloud providers operate large-scale data centers around the world to handle a large number of users request. However, data centers consume an immense amount of electrical energy that can lead to high operating costs and carbon emissions. One of the most common and eïŹ€ective method in order to reduce energy consumption is Dynamic Virtual Machines Consolidation (DVMC) enabled by the virtualization technology. DVMC dynamically consolidates Virtual Machines (VMs) into the minimum number of active servers and then switches the idle servers into a power-saving mode to save energy. However, maintaining the desired level of Quality-of-Service (QoS) between data centers and their users is critical for satisfying users’ expectations concerning performance. Therefore, the main challenge is to minimize the data center energy consumption while maintaining the required QoS. This thesis address this challenge by presenting novel DVMC approaches to reduce the energy consumption of data centers and improve resource utilization under workload independent quality of service constraints. These approaches can be divided into three main categories: heuristic, meta-heuristic and machine learning. Our ïŹrst contribution is a heuristic algorithm for solving the DVMC problem. The algorithm uses a linear regression-based prediction model to detect over-loaded servers based on the historical utilization data. Then it migrates some VMs from the over-loaded servers to avoid further performance degradations. Moreover, our algorithm consolidates VMs on fewer number of server for energy saving. The second and third contributions are two novel DVMC algorithms based on the Reinforcement Learning (RL) approach. RL is interesting for highly adaptive and autonomous management in dynamic environments. For this reason, we use RL to solve two main sub-problems in VM consolidation. The ïŹrst sub-problem is the server power mode detection (sleep or active). The second sub-problem is to ïŹnd an eïŹ€ective solution for server status detection (overloaded or non-overloaded). The fourth contribution of this thesis is an online optimization meta-heuristic algorithm called Ant Colony System-based Placement Optimization (ACS-PO). ACS is a suitable approach for VM consolidation due to the ease of parallelization, that it is close to the optimal solution, and its polynomial worst-case time complexity. The simulation results show that ACS-PO provides substantial improvement over other heuristic algorithms in reducing energy consumption, the number of VM migrations, and performance degradations. Our ïŹfth contribution is a Hierarchical VM management (HiVM) architecture based on a three-tier data center topology which is very common use in data centers. HiVM has the ability to scale across many thousands of servers with energy eïŹƒciency. Our sixth contribution is a Utilization Prediction-aware Best Fit Decreasing (UP-BFD) algorithm. UP-BFD can avoid SLA violations and needless migrations by taking into consideration the current and predicted future resource requirements for allocation, consolidation, and placement of VMs. Finally, the seventh and the last contribution is a novel Self-Adaptive Resource Management System (SARMS) in data centers. To achieve scalability, SARMS uses a hierarchical architecture that is partially inspired from HiVM. Moreover, SARMS provides self-adaptive ability for resource management by dynamically adjusting the utilization thresholds for each server in data centers.Siirretty Doriast

    Computer Science and Technology Series : XV Argentine Congress of Computer Science. Selected papers

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    CACIC'09 was the fifteenth Congress in the CACIC series. It was organized by the School of Engineering of the National University of Jujuy. The Congress included 9 Workshops with 130 accepted papers, 1 main Conference, 4 invited tutorials, different meetings related with Computer Science Education (Professors, PhD students, Curricula) and an International School with 5 courses. CACIC 2009 was organized following the traditional Congress format, with 9 Workshops covering a diversity of dimensions of Computer Science Research. Each topic was supervised by a committee of three chairs of different Universities. The call for papers attracted a total of 267 submissions. An average of 2.7 review reports were collected for each paper, for a grand total of 720 review reports that involved about 300 different reviewers. A total of 130 full papers were accepted and 20 of them were selected for this book.Red de Universidades con Carreras en InformĂĄtica (RedUNCI

    Dynamic Power Management of High Performance Network on Chip

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    With increased density of modern System on Chip(SoC) communication between nodes has become a major problem. Network on Chip is a novel on chip communication paradigm to solve this by using highly scalable and efficient packet switched network. The addition of intelligent networking on the chip adds to the chip’s power consumption thus making management of communication power an interesting and challenging research problem. While VLSI techniques have evolved over time to enable power reduction in the circuit level, the highly dynamic nature of modern large SoC demand more than that. This dissertation explores some innovative dynamic solutions to manage the ever increasing communication power in the post sub-micron era. Today’s highly integrated SoCs require great level of cross layer optimizations to provide maximum efficiency. This dissertation aims at the dynamic power management problem from top. Starting with a system level distribution and management down to microarchitecture enhancements were found necessary to deliver maximum power efficiency. A distributed power budget sharing technique is proposed. To efficiently satisfy the established power budget, a novel flow control and throttling technique is proposed. Finally power efficiency of underlying microarchitecture is explored and novel buffer and link management techniques are developed. All of the proposed techniques yield improvement in power-performance efficiency of the NoC infrastructure

    Proceedings of the First PhD Symposium on Sustainable Ultrascale Computing Systems (NESUS PhD 2016)

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    Proceedings of the First PhD Symposium on Sustainable Ultrascale Computing Systems (NESUS PhD 2016) Timisoara, Romania. February 8-11, 2016.The PhD Symposium was a very good opportunity for the young researchers to share information and knowledge, to present their current research, and to discuss topics with other students in order to look for synergies and common research topics. The idea was very successful and the assessment made by the PhD Student was very good. It also helped to achieve one of the major goals of the NESUS Action: to establish an open European research network targeting sustainable solutions for ultrascale computing aiming at cross fertilization among HPC, large scale distributed systems, and big data management, training, contributing to glue disparate researchers working across different areas and provide a meeting ground for researchers in these separate areas to exchange ideas, to identify synergies, and to pursue common activities in research topics such as sustainable software solutions (applications and system software stack), data management, energy efficiency, and resilience.European Cooperation in Science and Technology. COS
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