Building a semantically annotated corpus of clinical texts

In this paper, we describe the construction of a semantically annotated corpus of clinical texts for use in the development and evaluation of systems for automatically extracting clinically significant information from the textual component of patient records. The paper details the sampling of textual material from a collection of 20,000 cancer patient records, the development of a semantic annotation scheme, the annotation methodology, the distribution of annotations in the final corpus, and the use of the corpus for development of an adaptive information extraction system. The resulting corpus is the most richly semantically annotated resource for clinical text processing built to date, whose value has been demonstrated through its use in developing an effective information extraction system. The detailed presentation of our corpus construction and annotation methodology will be of value to others seeking to build high-quality semantically annotated corpora in biomedical domains

Annotating the meaning of discourse connectives by looking at their translation: The translation-spotting technique

The various meanings of discourse connectives like while and however are difficult to identify and annotate, even for trained human annotators. This problem is all the more important that connectives are salient textual markers of cohesion and need to be correctly interpreted for many NLP applications. In this paper, we suggest an alternative route to reach a reliable annotation of connectives, by making use of the information provided by their translation in large parallel corpora. This method thus replaces the difficult explicit reasoning involved in traditional sense annotation by an empirical clustering of the senses emerging from the translations. We argue that this method has the advantage of providing more reliable reference data than traditional sense annotation. In addition, its simplicity allows for the rapid constitution of large annotated datasets

From Texts to Prerequisites. Identifying and Annotating Propaedeutic Relations in Educational Textual Resources

openPrerequisite Relations (PRs) are dependency relations established between two distinct concepts expressing which piece(s) of information a student has to learn first in order to understand a certain target concept. Such relations are one of the most fundamental in Education, playing a crucial role not only for what concerns new knowledge acquisition, but also in the novel applications of Artificial Intelligence to distant and e-learning. Indeed, resources annotated with such information could be used to develop automatic systems able to acquire and organize the knowledge embodied in educational resources, possibly fostering educational applications personalized, e.g., on students' needs and prior knowledge. The present thesis discusses the issues and challenges of identifying PRs in educational textual materials with the purpose of building a shared understanding of the relation among the research community. To this aim, we present a methodology for dealing with prerequisite relations as established in educational textual resources which aims at providing a systematic approach for uncovering PRs in textual materials, both when manually annotating and automatically extracting the PRs. The fundamental principles of our methodology guided the development of a novel framework for PR identification which comprises three components, each tackling a different task: (i) an annotation protocol (PREAP), reporting the set of guidelines and recommendations for building PR-annotated resources; (ii) an annotation tool (PRET), supporting the creation of manually annotated datasets reflecting the principles of PREAP; (iii) an automatic PR learning method based on machine learning (PREL). The main novelty of our methodology and framework lies in the fact that we propose to uncover PRs from textual resources relying solely on the content of the instructional material: differently from other works, rather than creating de-contextualised PRs, we acknowledge the presence of a PR between two concepts only if emerging from the way they are presented in the text. By doing so, we anchor relations to the text while modelling the knowledge structure entailed in the resource. As an original contribution of this work, we explore whether linguistic complexity of the text influences the task of manual identification of PRs. To this aim, we investigate the interplay between text and content in educational texts through a crowd-sourcing experiment on concept sequencing. Our methodology values the content of educational materials as it incorporates the evidence acquired from such investigation which suggests that PR recognition is highly influenced by the way in which concepts are introduced in the resource and by the complexity of the texts. The thesis reports a case study dealing with every component of the PR framework which produced a novel manually-labelled PR-annotated dataset.openXXXIII CICLO - DIGITAL HUMANITIES. TECNOLOGIE DIGITALI, ARTI, LINGUE, CULTURE E COMUNICAZIONE - Lingue, culture e tecnologie digitaliAlzetta, Chiar

Developing a multilayer semantic annotation scheme based on ISO standards for the visualization of a newswire corpus

In this paper, we describe the process of developing a multilayer semantic annotation scheme designed for extracting information from a European Portuguese corpus of news articles, at three levels, temporal, referential and semantic role labelling. The novelty of this scheme is the harmonization of parts 1, 4 and 9 of the ISO 24617 Language resource management - Semantic annotation framework. This annotation framework includes a set of entity structures (participants, events, times) and a set of links (temporal, aspectual, subordination, objectal and semantic roles) with several tags and attribute values that ensure adequate semantic and visual representations of news stories

Eesti keele üldvaldkonna tekstide laia kattuvusega automaatne sündmusanalüüs

Seoses tekstide suuremahulise digitaliseerimisega ning digitaalse tekstiloome järjest laiema levikuga on tohutul hulgal loomuliku keele tekste muutunud ja muutumas masinloetavaks. Masinloetavus omab potentsiaali muuta tekstimassiivid inimeste jaoks lihtsamini hallatavaks, nt lubada rakendusi nagu automaatne sisukokkuvõtete tegemine ja tekstide põhjal küsimustele vastamine, ent paraku ei ulatu praegused automaatanalüüsi võimalused tekstide sisu tegeliku mõistmiseni. Oletatakse, tekstide sisu mõistvale automaatanalüüsile viib meid lähemale sündmusanalüüs – kuna paljud tekstid on narratiivse ülesehitusega, tõlgendatavad kui „sündmuste kirjeldused”, peaks tekstidest sündmuste eraldamine ja formaalsel kujul esitamine pakkuma alust mitmete „teksti mõistmist” nõudvate keeletehnoloogia rakenduste loomisel. Käesolevas väitekirjas uuritakse, kuivõrd saab eestikeelsete tekstide sündmusanalüüsi käsitleda kui avatud sündmuste hulka ja üldvaldkonna tekste hõlmavat automaatse lingvistilise analüüsi ülesannet. Probleemile lähenetakse eesti keele automaatanalüüsi kontekstis uudsest, sündmuste ajasemantikale keskenduvast perspektiivist. Töös kohandatakse eesti keelele TimeML märgendusraamistik ja luuakse raamistikule toetuv automaatne ajaväljendite tuvastaja ning ajasemantilise märgendusega (sündmusviidete, ajaväljendite ning ajaseoste märgendusega) tekstikorpus; analüüsitakse korpuse põhjal inimmärgendajate kooskõla sündmusviidete ja ajaseoste määramisel ning lõpuks uuritakse võimalusi ajasemantika-keskse sündmusanalüüsi laiendamiseks geneeriliseks sündmusanalüüsiks sündmust väljendavate keelendite samaviitelisuse lahendamise näitel. Töö pakub suuniseid tekstide ajasemantika ja sündmusstruktuuri märgenduse edasiarendamiseks tulevikus ning töös loodud keeleressurssid võimaldavad nii konkreetsete lõpp-rakenduste (nt automaatne ajaküsimustele vastamine) katsetamist kui ka automaatsete märgendustööriistade edasiarendamist.  Due to massive scale digitalisation processes and a switch from traditional means of written communication to digital written communication, vast amounts of human language texts are becoming machine-readable. Machine-readability holds a potential for easing human effort on searching and organising large text collections, allowing applications such as automatic text summarisation and question answering. However, current tools for automatic text analysis do not reach for text understanding required for making these applications generic. It is hypothesised that automatic analysis of events in texts leads us closer to the goal, as many texts can be interpreted as stories/narratives that are decomposable into events. This thesis explores event analysis as broad-coverage and general domain automatic language analysis problem in Estonian, and provides an investigation starting from time-oriented event analysis and tending towards generic event analysis. We adapt TimeML framework to Estonian, and create an automatic temporal expression tagger and a news corpus manually annotated for temporal semantics (event mentions, temporal expressions, and temporal relations) for the language; we analyse consistency of human annotation of event mentions and temporal relations, and, finally, provide a preliminary study on event coreference resolution in Estonian news. The current work also makes suggestions on how future research can improve Estonian event and temporal semantic annotation, and the language resources developed in this work will allow future experimentation with end-user applications (such as automatic answering of temporal questions) as well as provide a basis for developing automatic semantic analysis tools