Communication channel analysis and real time compressed sensing for high density neural recording devices

Next generation neural recording and Brain- Machine Interface (BMI) devices call for high density or distributed systems with more than 1000 recording sites. As the recording site density grows, the device generates data on the scale of several hundred megabits per second (Mbps). Transmitting such large amounts of data induces significant power consumption and heat dissipation for the implanted electronics. Facing these constraints, efficient on-chip compression techniques become essential to the reduction of implanted systems power consumption. This paper analyzes the communication channel constraints for high density neural recording devices. This paper then quantifies the improvement on communication channel using efficient on-chip compression methods. Finally, This paper describes a Compressed Sensing (CS) based system that can reduce the data rate by > 10x times while using power on the order of a few hundred nW per recording channel

Parallelisation of greedy algorithms for compressive sensing reconstruction

Compressive Sensing (CS) is a technique which allows a signal to be compressed at the same time as it is captured. The process of capturing and simultaneously compressing the signal is represented as linear sampling, which can encompass a variety of physical processes or signal processing. Instead of explicitly identifying redundancies in the source signal, CS relies on the property of sparsity in order to reconstruct the compressed signal. While linear sampling is much less burdensome than conventional compression, this is more than made up for by the high computational cost of reconstructing a signal which has been captured using CS. Even when using some of the fastest reconstruction techniques, known as greedy pursuits, reconstruction of large problems can pose a significant burden, consuming a great deal of memory as well as compute time. Parallel computing is the foundation of the field of High Performance Computing (HPC). Modern supercomputers are generally composed of large clusters of standard servers, with a dedicated low-latency high-bandwidth interconnect network. On such a cluster, an appropriately written program can harness vast quantities of memory and computational power. However, in order to exploit a parallel compute resource, an algorithm usually has to be redesigned from the ground up. In this thesis I describe the development of parallel variants of two algorithms commonly used in CS reconstruction, Matching Pursuit (MP) and Orthogonal Matching Pursuit (OMP), resulting in the new distributed compute algorithms DistMP and DistOMP. I present the results from experiments showing how DistMP and DistOMP can utilise a compute cluster to solve CS problems much more quickly than a single computer could alone. Speed-up of as much as a factor of 76 is observed with DistMP when utilising 210 workers across 14 servers, compared to a single worker. Finally, I demonstrate how DistOMP can solve a problem with a 429GB equivalent sampling matrix in as little as 62 minutes using a 16-node compute cluster.Funded by an ICASE award from the Engineering and Physical Sciences Research Council, with sponsorship provided by Thales Research and Technology

ECG Signal Reconstruction on the IoT-Gateway and Efficacy of Compressive Sensing Under Real-time Constraints

Remote health monitoring is becoming indispensable, though, Internet of Things (IoTs)-based solutions have many implementation challenges, including energy consumption at the sensing node, and delay and instability due to cloud computing. Compressive sensing (CS) has been explored as a method to extend the battery lifetime of medical wearable devices. However, it is usually associated with computational complexity at the decoding end, increasing the latency of the system. Meanwhile, mobile processors are becoming computationally stronger and more efficient. Heterogeneous multicore platforms (HMPs) offer a local processing solution that can alleviate the limitations of remote signal processing. This paper demonstrates the real-time performance of compressed ECG reconstruction on ARM's big.LITTLE HMP and the advantages they provide as the primary processing unit of the IoT architecture. It also investigates the efficacy of CS in minimizing power consumption of a wearable device under real-time and hardware constraints. Results show that both the orthogonal matching pursuit and subspace pursuit reconstruction algorithms can be executed on the platform in real time and yield optimum performance on a single A15 core at minimum frequency. The CS extends the battery life of wearable medical devices up to 15.4% considering ECGs suitable for wellness applications and up to 6.6% for clinical grade ECGs. Energy consumption at the gateway is largely due to an active internet connection; hence, processing the signals locally both mitigates system's latency and improves gateway's battery life. Many remote health solutions can benefit from an architecture centered around the use of HMPs, a step toward better remote health monitoring systems.Peer reviewedFinal Published versio

Sparse Representation for Paddy Plants Nutrient Deficiency Tracking System

Moving object detection and tracking from consecutive frames of sensing devices (Unmanned Aerial Vehicles-UAV) needs efficient sampling from mass data with sufficient memory saving. Objects with super pixels are tracked by Compressive Sensing (CS) and the generative structural part model is designed to be adaptive to variation of deformable objects. CS can precisely reconstruct sparse signal with a small amount of sampling data. This system creates the sparse representation (SR) dictionary representing the nutrient deficiency tracking system for paddy plants to support the healthily growth of the whole field. This system uses compressed domain features that can be exploited to map the semantic features of consecutive frames. As the CS is a developing signal processing technique, a sparse signal is reconstructed with efficient sampling rate and creates the sparse dictionary. The SR for paddy plant health system can build rich information about paddy plants from signaling devices and can alert the deficiency conditions accurately in real time

Sparse representation based hyperspectral image compression and classification

Abstract This thesis presents a research work on applying sparse representation to lossy hyperspectral image compression and hyperspectral image classification. The proposed lossy hyperspectral image compression framework introduces two types of dictionaries distinguished by the terms sparse representation spectral dictionary (SRSD) and multi-scale spectral dictionary (MSSD), respectively. The former is learnt in the spectral domain to exploit the spectral correlations, and the latter in wavelet multi-scale spectral domain to exploit both spatial and spectral correlations in hyperspectral images. To alleviate the computational demand of dictionary learning, either a base dictionary trained offline or an update of the base dictionary is employed in the compression framework. The proposed compression method is evaluated in terms of different objective metrics, and compared to selected state-of-the-art hyperspectral image compression schemes, including JPEG 2000. The numerical results demonstrate the effectiveness and competitiveness of both SRSD and MSSD approaches. For the proposed hyperspectral image classification method, we utilize the sparse coefficients for training support vector machine (SVM) and k-nearest neighbour (kNN) classifiers. In particular, the discriminative character of the sparse coefficients is enhanced by incorporating contextual information using local mean filters. The classification performance is evaluated and compared to a number of similar or representative methods. The results show that our approach could outperform other approaches based on SVM or sparse representation. This thesis makes the following contributions. It provides a relatively thorough investigation of applying sparse representation to lossy hyperspectral image compression. Specifically, it reveals the effectiveness of sparse representation for the exploitation of spectral correlations in hyperspectral images. In addition, we have shown that the discriminative character of sparse coefficients can lead to superior performance in hyperspectral image classification.EM201

ИНТЕЛЛЕКТУАЛЬНЫЙ числовым программным ДЛЯ MIMD-компьютер

For most scientific and engineering problems simulated on computers the solving of problems of the computational mathematics with approximately given initial data constitutes an intermediate or a final stage. Basic problems of the computational mathematics include the investigating and solving of linear algebraic systems, evaluating of eigenvalues and eigenvectors of matrices, the solving of systems of non-linear equations, numerical integration of initial- value problems for systems of ordinary differential equations.Для більшості наукових та інженерних задач моделювання на ЕОМ рішення задач обчислювальної математики з наближено заданими вихідними даними складає проміжний або остаточний етап. Основні проблеми обчислювальної математики відносяться дослідження і рішення лінійних алгебраїчних систем оцінки власних значень і власних векторів матриць, рішення систем нелінійних рівнянь, чисельного інтегрування початково задач для систем звичайних диференціальних рівнянь.Для большинства научных и инженерных задач моделирования на ЭВМ решение задач вычислительной математики с приближенно заданным исходным данным составляет промежуточный или окончательный этап. Основные проблемы вычислительной математики относятся исследования и решения линейных алгебраических систем оценки собственных значений и собственных векторов матриц, решение систем нелинейных уравнений, численного интегрирования начально задач для систем обыкновенных дифференциальных уравнений

Dimensionality reduction and sparse representations in computer vision

The proliferation of camera equipped devices, such as netbooks, smartphones and game stations, has led to a significant increase in the production of visual content. This visual information could be used for understanding the environment and offering a natural interface between the users and their surroundings. However, the massive amounts of data and the high computational cost associated with them, encumbers the transfer of sophisticated vision algorithms to real life systems, especially ones that exhibit resource limitations such as restrictions in available memory, processing power and bandwidth. One approach for tackling these issues is to generate compact and descriptive representations of image data by exploiting inherent redundancies. We propose the investigation of dimensionality reduction and sparse representations in order to accomplish this task. In dimensionality reduction, the aim is to reduce the dimensions of the space where image data reside in order to allow resource constrained systems to handle them and, ideally, provide a more insightful description. This goal is achieved by exploiting the inherent redundancies that many classes of images, such as faces under different illumination conditions and objects from different viewpoints, exhibit. We explore the description of natural images by low dimensional non-linear models called image manifolds and investigate the performance of computer vision tasks such as recognition and classification using these low dimensional models. In addition to dimensionality reduction, we study a novel approach in representing images as a sparse linear combination of dictionary examples. We investigate how sparse image representations can be used for a variety of tasks including low level image modeling and higher level semantic information extraction. Using tools from dimensionality reduction and sparse representation, we propose the application of these methods in three hierarchical image layers, namely low-level features, mid-level structures and high-level attributes. Low level features are image descriptors that can be extracted directly from the raw image pixels and include pixel intensities, histograms, and gradients. In the first part of this work, we explore how various techniques in dimensionality reduction, ranging from traditional image compression to the recently proposed Random Projections method, affect the performance of computer vision algorithms such as face detection and face recognition. In addition, we discuss a method that is able to increase the spatial resolution of a single image, without using any training examples, according to the sparse representations framework. In the second part, we explore mid-level structures, including image manifolds and sparse models, produced by abstracting information from low-level features and offer compact modeling of high dimensional data. We propose novel techniques for generating more descriptive image representations and investigate their application in face recognition and object tracking. In the third part of this work, we propose the investigation of a novel framework for representing the semantic contents of images. This framework employs high level semantic attributes that aim to bridge the gap between the visual information of an image and its textual description by utilizing low level features and mid level structures. This innovative paradigm offers revolutionary possibilities including recognizing the category of an object from purely textual information without providing any explicit visual example

A fixed-point iterative schema for error minimization in k-sparse decomposition

Analogously to the well known greedy strategy called Orthogonal Matching Pursuit (OMP), we present a new algorithm to solve the sparse approximation problem over redundant dictionaries where the input signal is restricted to be a linear combination of k atoms or fewer from a fixed dictionary. The basic strategy of our method rests on a family of nonlinear mappings which results to be contractive in a interval close to zero. By iterating contractions and projections the method is able to extract the most significant components also for noisy signal which subsumes an ideal underlying signal having sufficiently sparse representation. For reasonable error level, the fixed point solution of such a iterative schema provides a sparse approximation containing only the nonzero terms characterizing the unique sparsest representation of the ideal noiseless sparse signal. The heuristic method so derived has been applied both to synthetic and real data. The former was generated by combining exact signals drawn by usual Bernoulli-Gaussian model and Gaussian noise; the later is taken by electrocardiogram (ECG) signals with application to the dictionary learning problem. In both cases the proposed method outperforms OMP method both regarding sparse approximation error and computation time