2,735 research outputs found
2HOT: An Improved Parallel Hashed Oct-Tree N-Body Algorithm for Cosmological Simulation
We report on improvements made over the past two decades to our adaptive
treecode N-body method (HOT). A mathematical and computational approach to the
cosmological N-body problem is described, with performance and scalability
measured up to 256k () processors. We present error analysis and
scientific application results from a series of more than ten 69 billion
() particle cosmological simulations, accounting for
floating point operations. These results include the first simulations using
the new constraints on the standard model of cosmology from the Planck
satellite. Our simulations set a new standard for accuracy and scientific
throughput, while meeting or exceeding the computational efficiency of the
latest generation of hybrid TreePM N-body methods.Comment: 12 pages, 8 figures, 77 references; To appear in Proceedings of SC
'1
Preparing HPC Applications for the Exascale Era: A Decoupling Strategy
Production-quality parallel applications are often a mixture of diverse
operations, such as computation- and communication-intensive, regular and
irregular, tightly coupled and loosely linked operations. In conventional
construction of parallel applications, each process performs all the
operations, which might result inefficient and seriously limit scalability,
especially at large scale. We propose a decoupling strategy to improve the
scalability of applications running on large-scale systems.
Our strategy separates application operations onto groups of processes and
enables a dataflow processing paradigm among the groups. This mechanism is
effective in reducing the impact of load imbalance and increases the parallel
efficiency by pipelining multiple operations. We provide a proof-of-concept
implementation using MPI, the de-facto programming system on current
supercomputers. We demonstrate the effectiveness of this strategy by decoupling
the reduce, particle communication, halo exchange and I/O operations in a set
of scientific and data-analytics applications. A performance evaluation on
8,192 processes of a Cray XC40 supercomputer shows that the proposed approach
can achieve up to 4x performance improvement.Comment: The 46th International Conference on Parallel Processing (ICPP-2017
Power efficient job scheduling by predicting the impact of processor manufacturing variability
Modern CPUs suffer from performance and power consumption variability due to the manufacturing process. As a result, systems that do not consider such variability caused by manufacturing issues lead to performance degradations and wasted power. In order to avoid such negative impact, users and system administrators must actively counteract any manufacturing variability.
In this work we show that parallel systems benefit from taking into account the consequences of manufacturing variability when making scheduling decisions at the job scheduler level. We also show that it is possible to predict the impact of this variability on specific applications by using variability-aware power prediction models. Based on these power models, we propose two job scheduling policies that consider the effects of manufacturing variability for each application and that ensure that power consumption stays under a system-wide power budget. We evaluate our policies under different power budgets and traffic scenarios, consisting of both single- and multi-node parallel applications, utilizing up to 4096 cores in total. We demonstrate that they decrease job turnaround time, compared to contemporary scheduling policies used on production clusters, up to 31% while saving up to 5.5% energy.Postprint (author's final draft
Using Pilot Systems to Execute Many Task Workloads on Supercomputers
High performance computing systems have historically been designed to support
applications comprised of mostly monolithic, single-job workloads. Pilot
systems decouple workload specification, resource selection, and task execution
via job placeholders and late-binding. Pilot systems help to satisfy the
resource requirements of workloads comprised of multiple tasks. RADICAL-Pilot
(RP) is a modular and extensible Python-based pilot system. In this paper we
describe RP's design, architecture and implementation, and characterize its
performance. RP is capable of spawning more than 100 tasks/second and supports
the steady-state execution of up to 16K concurrent tasks. RP can be used
stand-alone, as well as integrated with other application-level tools as a
runtime system
NoCo: ILP-based worst-case contention estimation for mesh real-time manycores
Manycores are capable of providing the computational demands required by functionally-advanced critical applications in domains such as automotive and avionics. In manycores a network-on-chip (NoC) provides access to shared caches and memories and hence concentrates most of the contention that tasks suffer, with effects on the worst-case contention delay (WCD) of packets and tasks' WCET. While several proposals minimize the impact of individual NoC parameters on WCD, e.g. mapping and routing, there are strong dependences among these NoC parameters. Hence, finding the optimal NoC configurations requires optimizing all parameters simultaneously, which represents a multidimensional optimization problem. In this paper we propose NoCo, a novel approach that combines ILP and stochastic optimization to find NoC configurations in terms of packet routing, application mapping, and arbitration weight allocation. Our results show that NoCo improves other techniques that optimize a subset of NoC parameters.This work has been partially supported by the Spanish Ministry of Economy and Competitiveness under grant TIN2015-
65316-P and the HiPEAC Network of Excellence. It also received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (agreement No. 772773). Carles Hernández
is jointly supported by the MINECO and FEDER funds
through grant TIN2014-60404-JIN. Jaume Abella has been
partially supported by the Spanish Ministry of Economy and
Competitiveness under Ramon y Cajal postdoctoral fellowship
number RYC-2013-14717. Enrico Mezzetti has been partially
supported by the Spanish Ministry of Economy and Competitiveness
under Juan de la Cierva-Incorporaci´on postdoctoral
fellowship number IJCI-2016-27396.Peer ReviewedPostprint (author's final draft
Many-Task Computing and Blue Waters
This report discusses many-task computing (MTC) generically and in the
context of the proposed Blue Waters systems, which is planned to be the largest
NSF-funded supercomputer when it begins production use in 2012. The aim of this
report is to inform the BW project about MTC, including understanding aspects
of MTC applications that can be used to characterize the domain and
understanding the implications of these aspects to middleware and policies.
Many MTC applications do not neatly fit the stereotypes of high-performance
computing (HPC) or high-throughput computing (HTC) applications. Like HTC
applications, by definition MTC applications are structured as graphs of
discrete tasks, with explicit input and output dependencies forming the graph
edges. However, MTC applications have significant features that distinguish
them from typical HTC applications. In particular, different engineering
constraints for hardware and software must be met in order to support these
applications. HTC applications have traditionally run on platforms such as
grids and clusters, through either workflow systems or parallel programming
systems. MTC applications, in contrast, will often demand a short time to
solution, may be communication intensive or data intensive, and may comprise
very short tasks. Therefore, hardware and software for MTC must be engineered
to support the additional communication and I/O and must minimize task dispatch
overheads. The hardware of large-scale HPC systems, with its high degree of
parallelism and support for intensive communication, is well suited for MTC
applications. However, HPC systems often lack a dynamic resource-provisioning
feature, are not ideal for task communication via the file system, and have an
I/O system that is not optimized for MTC-style applications. Hence, additional
software support is likely to be required to gain full benefit from the HPC
hardware
Revisiting Matrix Product on Master-Worker Platforms
This paper is aimed at designing efficient parallel matrix-product algorithms
for heterogeneous master-worker platforms. While matrix-product is
well-understood for homogeneous 2D-arrays of processors (e.g., Cannon algorithm
and ScaLAPACK outer product algorithm), there are three key hypotheses that
render our work original and innovative:
- Centralized data. We assume that all matrix files originate from, and must
be returned to, the master.
- Heterogeneous star-shaped platforms. We target fully heterogeneous
platforms, where computational resources have different computing powers.
- Limited memory. Because we investigate the parallelization of large
problems, we cannot assume that full matrix panels can be stored in the worker
memories and re-used for subsequent updates (as in ScaLAPACK).
We have devised efficient algorithms for resource selection (deciding which
workers to enroll) and communication ordering (both for input and result
messages), and we report a set of numerical experiments on various platforms at
Ecole Normale Superieure de Lyon and the University of Tennessee. However, we
point out that in this first version of the report, experiments are limited to
homogeneous platforms
- …