Elephant Search with Deep Learning for Microarray Data Analysis

Even though there is a plethora of research in Microarray gene expression data analysis, still, it poses challenges for researchers to effectively and efficiently analyze the large yet complex expression of genes. The feature (gene) selection method is of paramount importance for understanding the differences in biological and non-biological variation between samples. In order to address this problem, a novel elephant search (ES) based optimization is proposed to select best gene expressions from the large volume of microarray data. Further, a promising machine learning method is envisioned to leverage such high dimensional and complex microarray dataset for extracting hidden patterns inside to make a meaningful prediction and most accurate classification. In particular, stochastic gradient descent based Deep learning (DL) with softmax activation function is then used on the reduced features (genes) for better classification of different samples according to their gene expression levels. The experiments are carried out on nine most popular Cancer microarray gene selection datasets, obtained from UCI machine learning repository. The empirical results obtained by the proposed elephant search based deep learning (ESDL) approach are compared with most recent published article for its suitability in future Bioinformatics research.Comment: 12 pages, 5 Tabl

Enriched Firefly Algorithm for Solving Reactive Power Problem

In this paper, Enriched Firefly Algorithm (EFA) is planned to solve optimal reactive power dispatch problem. This algorithm is a kind of swarm intelligence algorithm based on the response of a firefly to the light of other fireflies. In this paper, we plan an augmentation on the original firefly algorithm. The proposed algorithm extends the single population FA to the interacting multi-swarms by cooperative Models. The proposed EFA has been tested on standard IEEE 30 bus test system and simulation results show clearly the better performance of the proposed algorithm in reducing the real power loss

Self-Organizing Traffic Flow Prediction with an Optimized Deep Belief Network for Internet of Vehicles

To assist in the broadcasting of time-critical traffic information in an Internet of Vehicles (IoV) and vehicular sensor networks (VSN), fast network connectivity is needed. Accurate traffic information prediction can improve traffic congestion and operation efficiency, which helps to reduce commute times, noise and carbon emissions. In this study, we present a novel approach for predicting the traffic flow volume by using traffic data in self-organizing vehicular networks. The proposed method is based on using a probabilistic generative neural network techniques called deep belief network (DBN) that includes multiple layers of restricted Boltzmann machine (RBM) auto-encoders. Time series data generated from the roadside units (RSUs) for five highway links are used by a three layer DBN to extract and learn key input features for constructing a model to predict traffic flow. Back-propagation is utilized as a general learning algorithm for fine-tuning the weight parameters among the visible and hidden layers of RBMs. During the training process the firefly algorithm (FFA) is applied for optimizing the DBN topology and learning rate parameter. Monte Carlo simulations are used to assess the accuracy of the prediction model. The results show that the proposed model achieves superior performance accuracy for predicting traffic flow in comparison with other approaches applied in the literature. The proposed approach can help to solve the problem of traffic congestion, and provide guidance and advice for road users and traffic regulators

A Review and Comparative Study of Firefly Algorithm and its Modified Versions

Firefly algorithm is one of the well-known swarm-based algorithms which gained popularity within a short time and has different applications. It is easy to understand and implement. The existing studies show that it is prone to premature convergence and suggest the relaxation of having constant parameters. To boost the performance of the algorithm, different modifications are done by several researchers. In this chapter, we will review these modifications done on the standard firefly algorithm based on parameter modification, modified search strategy and change the solution space to make the search easy using different probability distributions. The modifications are done for continuous as well as non-continuous problems. Different studies including hybridization of firefly algorithm with other algorithms, extended firefly algorithm for multiobjective as well as multilevel optimization problems, for dynamic problems, constraint handling and convergence study will also be briefly reviewed. A simulation-based comparison will also be provided to analyse the performance of the standard as well as the modified versions of the algorithm

A Multi-Population FA for Automatic Facial Emotion Recognition

Automatic facial emotion recognition system is popular in various domains such as health care, surveillance and human-robot interaction. In this paper we present a novel multi-population FA for automatic facial emotion recognition. The overall system is equipped with horizontal vertical neighborhood local binary patterns (hvnLBP) for feature extraction, a novel multi-population FA for feature selection and diverse classifiers for emotion recognition. First, we extract features using hvnLBP, which are robust to illumination changes, scaling and rotation variations. Then, a novel FA variant is proposed to further select most important and emotion specific features. These selected features are used as input to the classifier to further classify seven basic emotions. The proposed system is evaluated with multiple facial expression datasets and also compared with other state-of-the-art models

Improving K-means clustering with enhanced Firefly Algorithms

In this research, we propose two variants of the Firefly Algorithm (FA), namely inward intensified exploration FA (IIEFA) and compound intensified exploration FA (CIEFA), for undertaking the obstinate problems of initialization sensitivity and local optima traps of the K-means clustering model. To enhance the capability of both exploitation and exploration, matrix-based search parameters and dispersing mechanisms are incorporated into the two proposed FA models. We first replace the attractiveness coefficient with a randomized control matrix in the IIEFA model to release the FA from the constraints of biological law, as the exploitation capability in the neighbourhood is elevated from a one-dimensional to multi-dimensional search mechanism with enhanced diversity in search scopes, scales, and directions. Besides that, we employ a dispersing mechanism in the second CIEFA model to dispatch fireflies with high similarities to new positions out of the close neighbourhood to perform global exploration. This dispersing mechanism ensures sufficient variance between fireflies in comparison to increase search efficiency. The ALL-IDB2 database, a skin lesion data set, and a total of 15 UCI data sets are employed to evaluate efficiency of the proposed FA models on clustering tasks. The minimum Redundancy Maximum Relevance (mRMR)-based feature selection method is also adopted to reduce feature dimensionality. The empirical results indicate that the proposed FA models demonstrate statistically significant superiority in both distance and performance measures for clustering tasks in comparison with conventional K-means clustering, five classical search methods, and five advanced FA variants

An Optimisation-Driven Prediction Method for Automated Diagnosis and Prognosis

open access articleThis article presents a novel hybrid classification paradigm for medical diagnoses and prognoses prediction. The core mechanism of the proposed method relies on a centroid classification algorithm whose logic is exploited to formulate the classification task as a real-valued optimisation problem. A novel metaheuristic combining the algorithmic structure of Swarm Intelligence optimisers with the probabilistic search models of Estimation of Distribution Algorithms is designed to optimise such a problem, thus leading to high-accuracy predictions. This method is tested over 11 medical datasets and compared against 14 cherry-picked classification algorithms. Results show that the proposed approach is competitive and superior to the state-of-the-art on several occasions