An image processing pipeline to segment iris for unconstrained cow identification system

One of the most evident costs in cow farming is the identification of the animals. Classic identification processes are labour-intensive, prone to human errors and invasive for the animal. An automated alternative is an animal identification based on unique biometric patterns like iris recognition; in this context, correct segmentation of the region of interest becomes of critical importance. This work introduces a bovine iris segmentation pipeline that processes images taken in the wild, extracting the iris region. The solution deals with images taken with a regular visible-light camera in real scenarios, where reflections in the iris and camera flash introduce a high level of noise that makes the segmentation procedure challenging. Traditional segmentation techniques for the human iris are not applicable given the nature of the bovine eye; at this aim, a dataset composed of catalogued images and manually labelled ground truth data of Aberdeen-Angus has been used for the experiments and made publicly available. The unique ID number for each different animal in the dataset is provided, making it suitable for recognition tasks. Segmentation results have been validated with our dataset showing high reliability: with the most pessimistic metric (i.e. intersection over union), a mean score of 0.8957 has been obtained.Fil: Larregui, Juan Ignacio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Ciencias e Ingeniería de la Computación; Argentina. Universidad Nacional del Sur. Departamento de Ciencias e Ingeniería de la Computación; ArgentinaFil: Cazzato, Dario. : University Of Luxembourg; Luxemburgo. Interdisciplinary Centre For Security Reliability And T; LuxemburgoFil: Castro, Silvia Mabel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Ciencias e Ingeniería de la Computación; Argentina. Universidad Nacional del Sur. Departamento de Ciencias e Ingeniería de la Computación; Argentin

Iris recognition method based on segmentation

The development of science and studies has led to the creation of many modern means and technologies that focused and directed their interests on enhancing security due to the increased need for high degrees of security and protection for individuals and societies. Hence identification using a person's vital characteristics is an important privacy topic for governments, businesses and individuals. A lot of biometric features such as fingerprint, facial measurements, acid, palm, gait, fingernails and iris have been studied and used among all the biometrics, in particular, the iris gets the attention because it has unique advantages as the iris pattern is unique and does not change over time, providing the required accuracy and stability in verification systems. This feature is impossible to modify without risk. When identifying with the iris of the eye, the discrimination system only needs to compare the data of the characteristics of the iris of the person to be tested to determine the individual's identity, so the iris is extracted only from the images taken. Determining correct iris segmentation methods is the most important stage in the verification system, including determining the limbic boundaries of the iris and pupil, whether there is an effect of eyelids and shadows, and not exaggerating centralization that reduces the effectiveness of the iris recognition system. There are many techniques for subtracting the iris from the captured image. This paper presents the architecture of biometric systems that use iris to distinguish people and a recent survey of iris segmentation methods used in recent research, discusses methods and algorithms used for this purpose, presents datasets and the accuracy of each method, and compares the performance of each method used in previous studie

Identification and recognition of animals from biometric markers using computer vision approaches: a review

Although classic methods (such as ear tagging, marking, etc.) are generally used for animal identification and recognition, biometric methods have gained popularity in recent years due to the advantages they offer. Systems utilizing biometric markers have been developed for various purposes in animal management, including more effective and accurate tracking of animals, vaccination, disease management, and prevention of theft and fraud. Animals" irises, retinas, faces, muzzle, and body patterns contain unique biometric markers. The use of these markers in computer vision approaches for animal identification and tracking systems has become a highly effective and promising research area in recent years. This review aims to provide a general overview of the latest developments in image processing approaches for animal identification and recognition applications. In this review, we examined in detail all relevant studies we could access from different electronic databases for each biometric method. Afterward, the opportunities and challenges of classical and biometric methods were compared. We anticipate that this study, which conducts a literature review on animal identification and recognition based on computer vision approaches, will shed light on future research towards developing automated systems with biometric methods

Advances in Sensors, Big Data and Machine Learning in Intelligent Animal Farming

Animal production (e.g., milk, meat, and eggs) provides valuable protein production for human beings and animals. However, animal production is facing several challenges worldwide such as environmental impacts and animal welfare/health concerns. In animal farming operations, accurate and efficient monitoring of animal information and behavior can help analyze the health and welfare status of animals and identify sick or abnormal individuals at an early stage to reduce economic losses and protect animal welfare. In recent years, there has been growing interest in animal welfare. At present, sensors, big data, machine learning, and artificial intelligence are used to improve management efficiency, reduce production costs, and enhance animal welfare. Although these technologies still have challenges and limitations, the application and exploration of these technologies in animal farms will greatly promote the intelligent management of farms. Therefore, this Special Issue will collect original papers with novel contributions based on technologies such as sensors, big data, machine learning, and artificial intelligence to study animal behavior monitoring and recognition, environmental monitoring, health evaluation, etc., to promote intelligent and accurate animal farm management

Anatomical Modeling of Cerebral Microvascular Structures: Application to Identify Biomarkers of Microstrokes

Les réseaux microvasculaires corticaux sont responsables du transport de l’oxygène et des substrats énergétiques vers les neurones. Ces réseaux réagissent dynamiquement aux demandes énergétiques lors d’une activation neuronale par le biais du couplage neurovasculaire. Afin d’élucider le rôle de la composante microvasculaire dans ce processus de couplage, l’utilisation de la modélisation in-formatique pourrait se révéler un élément clé. Cependant, la manque de méthodologies de calcul appropriées et entièrement automatisées pour modéliser et caractériser les réseaux microvasculaires reste l’un des principaux obstacles. Le développement d’une solution entièrement automatisée est donc important pour des explorations plus avancées, notamment pour quantifier l’impact des mal-formations vasculaires associées à de nombreuses maladies cérébrovasculaires. Une observation courante dans l’ensemble des troubles neurovasculaires est la formation de micro-blocages vascu-laires cérébraux (mAVC) dans les artérioles pénétrantes de la surface piale. De récents travaux ont démontré l’impact de ces événements microscopiques sur la fonction cérébrale. Par conséquent, il est d’une importance vitale de développer une approche non invasive et comparative pour identifier leur présence dans un cadre clinique. Dans cette thèse,un pipeline de traitement entièrement automatisé est proposé pour aborder le prob-lème de la modélisation anatomique microvasculaire. La méthode de modélisation consiste en un réseau de neurones entièrement convolutif pour segmenter les capillaires sanguins, un générateur de modèle de surface 3D et un algorithme de contraction de la géométrie pour produire des mod-èles graphiques vasculaires ne comportant pas de connections multiples. Une amélioration de ce pipeline est développée plus tard pour alléger l’exigence de maillage lors de la phase de représen-tation graphique. Un nouveau schéma permettant de générer un modèle de graphe est développé avec des exigences d’entrée assouplies et permettant de retenir les informations sur les rayons des vaisseaux. Il est inspiré de graphes géométriques déformants construits en respectant les morpholo-gies vasculaires au lieu de maillages de surface. Un mécanisme pour supprimer la structure initiale du graphe à chaque exécution est implémenté avec un critère de convergence pour arrêter le pro-cessus. Une phase de raffinement est introduite pour obtenir des modèles vasculaires finaux. La modélisation informatique développée est ensuite appliquée pour simuler les signatures IRM po-tentielles de mAVC, combinant le marquage de spin artériel (ASL) et l’imagerie multidirectionnelle pondérée en diffusion (DWI). L’hypothèse est basée sur des observations récentes démontrant une réorientation radiale de la microvascularisation dans la périphérie du mAVC lors de la récupéra-tion chez la souris. Des lits capillaires synthétiques, orientés aléatoirement et radialement, et des angiogrammes de tomographie par cohérence optique (OCT), acquis dans le cortex de souris (n = 5) avant et après l’induction d’une photothrombose ciblée, sont analysés. Les graphes vasculaires informatiques sont exploités dans un simulateur 3D Monte-Carlo pour caractériser la réponse par résonance magnétique (MR), tout en considérant les effets des perturbations du champ magnétique causées par la désoxyhémoglobine, et l’advection et la diffusion des spins nucléaires. Le pipeline graphique proposé est validé sur des angiographies synthétiques et réelles acquises avec différentes modalités d’imagerie. Comparé à d’autres méthodes effectuées dans le milieu de la recherche, les expériences indiquent que le schéma proposé produit des taux d’erreur géométriques et topologiques amoindris sur divers angiogrammes. L’évaluation confirme également l’efficacité de la méthode proposée en fournissant des modèles représentatifs qui capturent tous les aspects anatomiques des structures vasculaires. Ensuite, afin de trouver des signatures de mAVC basées sur le signal IRM, la modélisation vasculaire proposée est exploitée pour quantifier le rapport de perte de signal intravoxel minimal lors de l’application de plusieurs directions de gradient, à des paramètres de séquence variables avec et sans ASL. Avec l’ASL, les résultats démontrent une dif-férence significative (p <0,05) entre le signal calculé avant et 3 semaines après la photothrombose. La puissance statistique a encore augmenté (p <0,005) en utilisant des angiogrammes capturés à la semaine suivante. Sans ASL, aucun changement de signal significatif n’est trouvé. Des rapports plus élevés sont obtenus à des intensités de champ magnétique plus faibles (par exemple, B0 = 3) et une lecture TE plus courte (<16 ms). Cette étude suggère que les mAVC pourraient être carac-térisés par des séquences ASL-DWI, et fournirait les informations nécessaires pour les validations expérimentales postérieures et les futurs essais comparatifs.----------ABSTRACT Cortical microvascular networks are responsible for carrying the necessary oxygen and energy substrates to our neurons. These networks react to the dynamic energy demands during neuronal activation through the process of neurovascular coupling. A key element in elucidating the role of the microvascular component in the brain is through computational modeling. However, the lack of fully-automated computational frameworks to model and characterize these microvascular net-works remains one of the main obstacles. Developing a fully-automated solution is thus substantial for further explorations, especially to quantify the impact of cerebrovascular malformations associ-ated with many cerebrovascular diseases. A common pathogenic outcome in a set of neurovascular disorders is the formation of microstrokes, i.e., micro occlusions in penetrating arterioles descend-ing from the pial surface. Recent experiments have demonstrated the impact of these microscopic events on brain function. Hence, it is of vital importance to develop a non-invasive and translatable approach to identify their presence in a clinical setting. In this thesis, a fully automatic processing pipeline to address the problem of microvascular anatom-ical modeling is proposed. The modeling scheme consists of a fully-convolutional neural network to segment microvessels, a 3D surface model generator and a geometry contraction algorithm to produce vascular graphical models with a single connected component. An improvement on this pipeline is developed later to alleviate the requirement of water-tight surface meshes as inputs to the graphing phase. The novel graphing scheme works with relaxed input requirements and intrin-sically captures vessel radii information, based on deforming geometric graphs constructed within vascular boundaries instead of surface meshes. A mechanism to decimate the initial graph struc-ture at each run is formulated with a convergence criterion to stop the process. A refinement phase is introduced to obtain final vascular models. The developed computational modeling is then ap-plied to simulate potential MRI signatures of microstrokes, combining arterial spin labeling (ASL) and multi-directional diffusion-weighted imaging (DWI). The hypothesis is driven based on recent observations demonstrating a radial reorientation of microvasculature around the micro-infarction locus during recovery in mice. Synthetic capillary beds, randomly- and radially oriented, and op-tical coherence tomography (OCT) angiograms, acquired in the barrel cortex of mice (n=5) before and after inducing targeted photothrombosis, are analyzed. The computational vascular graphs are exploited within a 3D Monte-Carlo simulator to characterize the magnetic resonance (MR) re-sponse, encompassing the effects of magnetic field perturbations caused by deoxyhemoglobin, and the advection and diffusion of the nuclear spins. The proposed graphing pipeline is validated on both synthetic and real angiograms acquired with different imaging modalities. Compared to other efficient and state-of-the-art graphing schemes, the experiments indicate that the proposed scheme produces the lowest geometric and topological error rates on various angiograms. The evaluation also confirms the efficiency of the proposed scheme in providing representative models that capture all anatomical aspects of vascular struc-tures. Next, searching for MRI-based signatures of microstokes, the proposed vascular modeling is exploited to quantify the minimal intravoxel signal loss ratio when applying multiple gradient di-rections, at varying sequence parameters with and without ASL. With ASL, the results demonstrate a significant difference (p<0.05) between the signal-ratios computed at baseline and 3 weeks after photothrombosis. The statistical power further increased (p<0.005) using angiograms captured at week 4. Without ASL, no reliable signal change is found. Higher ratios with improved significance are achieved at low magnetic field strengths (e.g., at 3 Tesla) and shorter readout TE (<16 ms). This study suggests that microstrokes might be characterized through ASL-DWI sequences, and provides necessary insights for posterior experimental validations, and ultimately, future transla-tional trials

Ganadería de precisión en vacuno de carne

La ganadería de precisión es el conjunto de herramientas que permiten la automatización de las labores de granja y brindan información útil para la toma de decisiones orientadas a la eficiencia productiva del ganado. Esta revisión sistemática identificó las diferentes herramientas de ganadería de precisión probadas en vacuno de carne. Se utilizaron palabras claves que permitieran abarcar las diferentes herramientas existentes en las bases de datos en inglés de Web of Science (WoS) y ProQuest (PQ), utilizándose el gestor bibliográfico EndNote online. De los registros encontrados, se hizo una selección de trabajos relevantes en base al título y el resumen y se accedió posteriormente al trabajo completo de aquellos pre-seleccionados a través del acceso desde la biblioteca de la Universidad de Zaragoza o de búsquedas directas en Google. Finalmente, las 97 publicaciones que se encontraron se clasificaron según la utilidad que ofrecen las herramientas al ganadero en: identificación electrónica, reproducción, peso automático, medidas corporales, rastreo del animal, vallado virtual, monitorización de la salud, bienestar animal, alimentación, rumia, medio ambiente y granjas inteligentes. Según los resultados se pudo concluir que la ganadería de precisión ayuda al ganadero a resolver problemas particulares o más globales de la producción de carne. Sin embargo, es necesario el desarrollo de más estudios para ampliar la información enfocada en ganado vacuno de carne, y desarrollar más herramientas de precisión a nivel comercial o mejorar las existentes, para incentivar la implementación de tecnología en la granja ganadera y que le ayude a producir de manera más sostenible.<br /

Low-Resource Unsupervised NMT:Diagnosing the Problem and Providing a Linguistically Motivated Solution

Unsupervised Machine Translation hasbeen advancing our ability to translatewithout parallel data, but state-of-the-artmethods assume an abundance of mono-lingual data. This paper investigates thescenario where monolingual data is lim-ited as well, finding that current unsuper-vised methods suffer in performance un-der this stricter setting. We find that theperformance loss originates from the poorquality of the pretrained monolingual em-beddings, and we propose using linguis-tic information in the embedding train-ing scheme. To support this, we look attwo linguistic features that may help im-prove alignment quality: dependency in-formation and sub-word information. Us-ing dependency-based embeddings resultsin a complementary word representationwhich offers a boost in performance ofaround 1.5 BLEU points compared to stan-dardWORD2VECwhen monolingual datais limited to 1 million sentences per lan-guage. We also find that the inclusion ofsub-word information is crucial to improv-ing the quality of the embedding