An extended depth-first search algorithm for optimal triangulation of Bayesian networks

The junction tree algorithm is currently the most popular algorithm for exact inference on Bayesian networks. To improve the time complexity of the junction tree algorithm, we need to find a triangulation with the optimal total table size. For this purpose, Ottosen and Vomlel have proposed a depth-first search (DFS) algorithm. They also introduced several techniques to improve the DFS algorithm, including dynamic clique maintenance and coalescing map pruning. Nevertheless, the efficiency and scalability of that algorithm leave much room for improvement. First, the dynamic clique maintenance allows to recompute some cliques. Second, in the worst case, the DFS algorithm explores the search space of all elimination orders, which has size n!, where n is the number of variables in the Bayesian network. To mitigate these problems, we propose an extended depth-first search (EDFS) algorithm. The new EDFS algorithm introduces the following two techniques as improvements to the DFS algorithm: (1) a new dynamic clique maintenance algorithm that computes only those cliques that contain a new edge, and (2) a new pruning rule, called pivot clique pruning. The new dynamic clique maintenance algorithm explores a smaller search space and runs faster than the Ottosen and Vomlel approach. This improvement can decrease the overhead cost of the DFS algorithm, and the pivot clique pruning reduces the size of the search space by a factor of O(n2). Our empirical results show that our proposed algorithm finds an optimal triangulation markedly faster than the state-of-the-art algorithm does

ベイジアンネットワークにおける確率推論の高速化のための最適三角化アルゴリズムの提案

　Bayesian networks are widely used probabilistic graphical models that provide a compact representation of joint probability distributions over a set of variables. A common inference task in Bayesian networks is to compute the posterior marginal distributions for the unobserved variables given some evidence variables that we have already observed. However, the inference problem is known to be NP-hard and this complexity of inference limits the usage of Bayesian networks. Many attempts to improve the inference algorithm have been made in the past two decades. Currently, the junction tree algorithm is among the most prominent exact inference algorithms. To perform efficient inference on a Bayesian network using the junction tree algorithm, it is necessary to find a triangulation of the moral graph of the Bayesian network such that the total table size is small. In this context, the total table size is used to measure the computational complexity of the junction tree inference algorithm. This thesis focuses on exact algorithms for finding a triangulation that minimizes the total table size for a given Bayesian network.　For optimal triangulation, Ottosen and Vomlel have proposed a depth-first search (DFS) algorithm. They also introduced several techniques to improve the DFS algorithm, including dynamic clique maintenance and coalescing map pruning. Nevertheless, the efficiency and scalability of their algorithm leave much room for improvement. First, the dynamic clique maintenance allows the recomputation of some cliques. Second, for a Bayesian network with n variables, the DFS algorithm runs in O*(n!) time because it explores a search space of all elimination orders. To mitigate these problems, an extended depth-first search (EDFS) algorithm is proposed in this thesis. The new EDFS algorithm introduces two techniques: (1) a new dynamic clique maintenance algorithm that computes only those cliques that contain a new edge, and (2) a new pruning rule, called pivot clique pruning. The new dynamic clique maintenance algorithm explores a smaller search space and runs faster than the Ottosen and Vomlel approach. This improvement can decrease the overhead cost of the DFS algorithm, and the pivot clique pruning reduces the size of the search space by a factor of O(n2). Our empirical results show that our proposed algorithm finds an optimal triangulation markedly faster than the state-of-the-art algorithm does.電気通信大学201

Solving Graph Problems via Potential Maximal Cliques : An Experimental Evaluation of the Bouchitté-Todinca Algorithm

Peer reviewe

Proceedings of the Fifth European Workshop on Probabilistic Graphical Models

Peer reviewe

Finding Optimal Tree Decompositions

The task of organizing a given graph into a structure called a tree decomposition is relevant in multiple areas of computer science. In particular, many NP-hard problems can be solved in polynomial time if a suitable tree decomposition of a graph describing the problem instance is given as a part of the input. This motivates the task of finding as good tree decompositions as possible, or ideally, optimal tree decompositions. This thesis is about finding optimal tree decompositions of graphs with respect to several notions of optimality. Each of the considered notions measures the quality of a tree decomposition in the context of an application. In particular, we consider a total of seven problems that are formulated as finding optimal tree decompositions: treewidth, minimum fill-in, generalized and fractional hypertreewidth, total table size, phylogenetic character compatibility, and treelength. For each of these problems we consider the BT algorithm of Bouchitté and Todinca as the method of finding optimal tree decompositions. The BT algorithm is well-known on the theoretical side, but to our knowledge the first time it was implemented was only recently for the 2nd Parameterized Algorithms and Computational Experiments Challenge (PACE 2017). The author’s implementation of the BT algorithm took the second place in the minimum fill-in track of PACE 2017. In this thesis we review and extend the BT algorithm and our implementation. In particular, we improve the eciency of the algorithm in terms of both theory and practice. We also implement the algorithm for each of the seven problems considered, introducing a novel adaptation of the algorithm for the maximum compatibility problem of phylogenetic characters. Our implementation outperforms alternative state-of-the-art approaches in terms of numbers of test instances solved on well-known benchmarks on minimum fill-in, generalized hypertreewidth, fractional hypertreewidth, total table size, and the maximum compatibility problem of phylogenetic characters. Furthermore, to our understanding the implementation is the first exact approach for the treelength problem

Mobile, collaborative augmented reality using cloudlets

The evolution in mobile applications to support advanced interactivity and demanding multimedia features is still ongoing. Novel application concepts (e.g. mobile Augmented Reality (AR)) are however hindered by the inherently limited resources available on mobile platforms (not withstanding the dramatic performance increases of mobile hardware). Offloading resource intensive application components to the cloud, also known as "cyber foraging", has proven to be a valuable solution in a variety of scenarios. However, also for collaborative scenarios, in which data together with its processing are shared between multiple users, this offloading concept is highly promising. In this paper, we investigate the challenges posed by offloading collaborative mobile applications. We present a middleware platform capable of autonomously deploying software components to minimize average CPU load, while guaranteeing smooth collaboration. As a use case, we present and evaluate a collaborative AR application, offering interaction between users, the physical environment as well as with the virtual objects superimposed on this physical environment