490 research outputs found
An ensemble deep learning based approach for red lesion detection in fundus images
Background and objectives: Diabetic retinopathy (DR) is one of the leading causes of preventable blindness in the world. Its earliest sign are red lesions, a general term that groups both microaneurysms (MAs) and hemorrhages (HEs). In daily clinical practice, these lesions are manually detected by physicians using fundus photographs. However, this task is tedious and time consuming, and requires an intensive effort due to the small size of the lesions and their lack of contrast. Computer-assisted diagnosis of DR based on red lesion detection is being actively explored due to its improvement effects both in clinicians consistency and accuracy. Moreover, it provides comprehensive feedback that is easy to assess by the physicians. Several methods for detecting red lesions have been proposed in the literature, most of them based on characterizing lesion candidates using hand crafted features, and classifying them into true or false positive detections. Deep learning based approaches, by contrast, are scarce in this domain due to the high expense of annotating the lesions manually. Methods: In this paper we propose a novel method for red lesion detection based on combining both deep learned and domain knowledge. Features learned by a convolutional neural network (CNN) are augmented by incorporating hand crafted features. Such ensemble vector of descriptors is used afterwards to identify true lesion candidates using a Random Forest classifier. Results: We empirically observed that combining both sources of information significantly improve results with respect to using each approach separately. Furthermore, our method reported the highest performance on a per-lesion basis on DIARETDB1 and e-ophtha, and for screening and need for referral on MESSIDOR compared to a second human expert. Conclusions: Results highlight the fact that integrating manually engineered approaches with deep learned features is relevant to improve results when the networks are trained from lesion-level annotated data. An open source implementation of our system is publicly available at https://github.com/ignaciorlando/red-lesion-detection.Fil: Orlando, José Ignacio. Universidad Nacional del Centro de la Provincia de Buenos Aires. Facultad de Ciencias Exactas. Grupo de Plasmas Densos Magnetizados. Provincia de Buenos Aires. Gobernación. Comision de Investigaciones Científicas. Grupo de Plasmas Densos Magnetizados; ArgentinaFil: Prokofyeva, Elena. Scientific Institute of Public Health; BélgicaFil: del Fresno, Mirta Mariana. Universidad Nacional del Centro de la Provincia de Buenos Aires. Facultad de Ciencias Exactas. Grupo de Plasmas Densos Magnetizados. Provincia de Buenos Aires. Gobernación. Comision de Investigaciones Científicas. Grupo de Plasmas Densos Magnetizados; ArgentinaFil: Blaschko, Matthew Brian. ESAT Speech Group; Bélgic
Lesion detection and Grading of Diabetic Retinopathy via Two-stages Deep Convolutional Neural Networks
We propose an automatic diabetic retinopathy (DR) analysis algorithm based on
two-stages deep convolutional neural networks (DCNN). Compared to existing
DCNN-based DR detection methods, the proposed algorithm have the following
advantages: (1) Our method can point out the location and type of lesions in
the fundus images, as well as giving the severity grades of DR. Moreover, since
retina lesions and DR severity appear with different scales in fundus images,
the integration of both local and global networks learn more complete and
specific features for DR analysis. (2) By introducing imbalanced weighting map,
more attentions will be given to lesion patches for DR grading, which
significantly improve the performance of the proposed algorithm. In this study,
we label 12,206 lesion patches and re-annotate the DR grades of 23,595 fundus
images from Kaggle competition dataset. Under the guidance of clinical
ophthalmologists, the experimental results show that our local lesion detection
net achieve comparable performance with trained human observers, and the
proposed imbalanced weighted scheme also be proved to significantly improve the
capability of our DCNN-based DR grading algorithm
Weakly-supervised localization of diabetic retinopathy lesions in retinal fundus images
Convolutional neural networks (CNNs) show impressive performance for image
classification and detection, extending heavily to the medical image domain.
Nevertheless, medical experts are sceptical in these predictions as the
nonlinear multilayer structure resulting in a classification outcome is not
directly graspable. Recently, approaches have been shown which help the user to
understand the discriminative regions within an image which are decisive for
the CNN to conclude to a certain class. Although these approaches could help to
build trust in the CNNs predictions, they are only slightly shown to work with
medical image data which often poses a challenge as the decision for a class
relies on different lesion areas scattered around the entire image. Using the
DiaretDB1 dataset, we show that on retina images different lesion areas
fundamental for diabetic retinopathy are detected on an image level with high
accuracy, comparable or exceeding supervised methods. On lesion level, we
achieve few false positives with high sensitivity, though, the network is
solely trained on image-level labels which do not include information about
existing lesions. Classifying between diseased and healthy images, we achieve
an AUC of 0.954 on the DiaretDB1.Comment: Accepted in Proc. IEEE International Conference on Image Processing
(ICIP), 201
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