Online Modeling and Tuning of Parallel Stream Processing Systems

Writing performant computer programs is hard. Code for high performance applications is profiled, tweaked, and re-factored for months specifically for the hardware for which it is to run. Consumer application code doesn\u27t get the benefit of endless massaging that benefits high performance code, even though heterogeneous processor environments are beginning to resemble those in more performance oriented arenas. This thesis offers a path to performant, parallel code (through stream processing) which is tuned online and automatically adapts to the environment it is given. This approach has the potential to reduce the tuning costs associated with high performance code and brings the benefit of performance tuning to consumer applications where otherwise it would be cost prohibitive. This thesis introduces a stream processing library and multiple techniques to enable its online modeling and tuning. Stream processing (also termed data-flow programming) is a compute paradigm that views an application as a set of logical kernels connected via communications links or streams. Stream processing is increasingly used by computational-x and x-informatics fields (e.g., biology, astrophysics) where the focus is on safe and fast parallelization of specific big-data applications. A major advantage of stream processing is that it enables parallelization without necessitating manual end-user management of non-deterministic behavior often characteristic of more traditional parallel processing methods. Many big-data and high performance applications involve high throughput processing, necessitating usage of many parallel compute kernels on several compute cores. Optimizing the orchestration of kernels has been the focus of much theoretical and empirical modeling work. Purely theoretical parallel programming models can fail when the assumptions implicit within the model are mis-matched with reality (i.e., the model is incorrectly applied). Often it is unclear if the assumptions are actually being met, even when verified under controlled conditions. Full empirical optimization solves this problem by extensively searching the range of likely configurations under native operating conditions. This, however, is expensive in both time and energy. For large, massively parallel systems, even deciding which modeling paradigm to use is often prohibitively expensive and unfortunately transient (with workload and hardware). In an ideal world, a parallel run-time will re-optimize an application continuously to match its environment, with little additional overhead. This work presents methods aimed at doing just that through low overhead instrumentation, modeling, and optimization. Online optimization provides a good trade-off between static optimization and online heuristics. To enable online optimization, modeling decisions must be fast and relatively accurate. Online modeling and optimization of a stream processing system first requires the existence of a stream processing framework that is amenable to the intended type of dynamic manipulation. To fill this void, we developed the RaftLib C++ template library, which enables usage of the stream processing paradigm for C++ applications (it is the run-time which is the basis of almost all the work within this dissertation). An application topology is specified by the user, however almost everything else is optimizable by the run-time. RaftLib takes advantage of the knowledge gained during the design of several prior streaming languages (notably Auto-Pipe). The resultant framework enables online migration of tasks, auto-parallelization, online buffer-reallocation, and other useful dynamic behaviors that were not available in many previous stream processing systems. Several benchmark applications have been designed to assess the performance gains through our approaches and compare performance to other leading stream processing frameworks. Information is essential to any modeling task, to that end a low-overhead instrumentation framework has been developed which is both dynamic and adaptive. Discovering a fast and relatively optimal configuration for a stream processing application often necessitates solving for buffer sizes within a finite capacity queueing network. We show that a generalized gain/loss network flow model can bootstrap the process under certain conditions. Any modeling effort, requires that a model be selected; often a highly manual task, involving many expensive operations. This dissertation demonstrates that machine learning methods (such as a support vector machine) can successfully select models at run-time for a streaming application. The full set of approaches are incorporated into the open source RaftLib framework

ORCA: Ordering-free Regions for Consistency and Atomicity

Writing correct synchronization is one of the main difficulties of multithreaded programming. Incorrect synchronization causes many subtle concurrency errors such as data races and atomicity violations. Previous work has proposed stronger memory consistency models to rule out certain classes of concurrency bugs. However, these approaches are limited by a program’s original (and possibly incorrect) synchronization. In this work, we provide stronger guarantees than previous memory consistency models by punctuating atomicity only at ordering constructs like barriers, but not at lock operations. We describe the Ordering-free Regions for Consistency and Atomicity (ORCA) system which enforces atomicity at the granularity of ordering-free regions (OFRs). While many atomicity violations occur at finer granularity, in an empirical study of many large multithreaded workloads we find no examples of code that requires atomicity coarser than OFRs. Thus, we believe OFRs are a conservative approximation of the atomicity requirements of many programs. ORCA assists programmers by throwing an exception when OFR atomicity is threatened, and, in exception-free executions, guaranteeing that all OFRs execute atomically. In our evaluation, we show that ORCA automatically prevents real concurrency bugs. A user-study of ORCA demonstrates that synchronizing a program with ORCA is easier than using a data race detector. We evaluate modest hardware support that allows ORCA to run with just 18% slowdown on average over pthreads, with very similar scalability

Performance and power comparisons between Fermi and Cypress GPUs

In recent years, modern graphics processing units have been widely adopted in high performance computing areas to solve large scale computation problems. The leading GPU manufacturers Nvidia and AMD have introduced series of products to the market. While sharing many similar design concepts, GPUs from these two manufacturers differ in several aspects on processor cores and the memory subsystem. In this work, we conduct a comprehensive study to characterize and compare the architectural features of Nvidia’s Fermi and AMD’s Cypress GPUs. We first investigate the performance and power consumptions of an AMD Cypress GPU. By employing a rigorous statistical model to analyze the execution behaviors of representative general-purpose GPU (GPGPU) applications, we conduct insightful investigations on the target GPU architecture. Our results demonstrate that the GPU execution throughput and the power dissipation are dependent on different architectural variables. Furthermore, we design a set of micro-benchmarks to study the power consumption features of different function units on the GPU. Based on those results, we derive instructive principles that can guide the design of power-efficient high performance computing systems. We then make the concentration shift to the Nvidia Fermi GPU and compare it with the product from AMD. Our results indicate that these two products have diverse advantages that are reflected in their performance for different sets of applications. In addition, we also compare the energy efficiencies of these two platforms since power/energy consumption is a major concern in the high performance computing system

Empirical and Statistical Application Modeling Using on -Chip Performance Monitors.

To analyze the performance of applications and architectures, both programmers and architects desire formal methods to explain anomalous behavior. To this end, we present various methods that utilize non-intrusive, performance-monitoring hardware only recently available on microprocessors to provide further explanations of observed behavior. All the methods attempt to characterize and explain the instruction-level parallelism achieved by codes on different architectures. We also present a prototype tool automating the analysis process to exploit the advantages of the empirical and statistical methods proposed. The empirical, statistical and hybrid methods are discussed and explained with case study results provided. The given methods further the wealth of tools available to programmer\u27s and architects for generally understanding the performance of scientific applications. Specifically, the models and tools presented provide new methods for evaluating and categorizing application performance. The empirical memory model serves to quantify the hierarchical memory performance of applications by inferring the incurred latencies of codes after the effect of latency hiding techniques are realized. The instruction-level model and its extensions model on-chip performance analytically giving insight into inherent performance bottlenecks in superscalar architectures. The statistical model and its hybrid extension provide other methods of categorizing codes via their statistical variations. The PTERA performance tool automates the use of performance counters for use by these methods across platforms making the modeling process easier still. These unique methods provide alternatives to performance modeling and categorizing not available previously in an attempt to utilize the inherent modeling capabilities of performance monitors on commodity processors for scientific applications