An Aggregation Method for Sparse Logistic Regression

$L_1$ regularized logistic regression has now become a workhorse of data mining and bioinformatics: it is widely used for many classification problems, particularly ones with many features. However, $L_1$ regularization typically selects too many features and that so-called false positives are unavoidable. In this paper, we demonstrate and analyze an aggregation method for sparse logistic regression in high dimensions. This approach linearly combines the estimators from a suitable set of logistic models with different underlying sparsity patterns and can balance the predictive ability and model interpretability. Numerical performance of our proposed aggregation method is then investigated using simulation studies. We also analyze a published genome-wide case-control dataset to further evaluate the usefulness of the aggregation method in multilocus association mapping

L1-Regularized Distributed Optimization: A Communication-Efficient Primal-Dual Framework

Despite the importance of sparsity in many large-scale applications, there are few methods for distributed optimization of sparsity-inducing objectives. In this paper, we present a communication-efficient framework for L1-regularized optimization in the distributed environment. By viewing classical objectives in a more general primal-dual setting, we develop a new class of methods that can be efficiently distributed and applied to common sparsity-inducing models, such as Lasso, sparse logistic regression, and elastic net-regularized problems. We provide theoretical convergence guarantees for our framework, and demonstrate its efficiency and flexibility with a thorough experimental comparison on Amazon EC2. Our proposed framework yields speedups of up to 50x as compared to current state-of-the-art methods for distributed L1-regularized optimization

CoCoA: A General Framework for Communication-Efficient Distributed Optimization

The scale of modern datasets necessitates the development of efficient distributed optimization methods for machine learning. We present a general-purpose framework for distributed computing environments, CoCoA, that has an efficient communication scheme and is applicable to a wide variety of problems in machine learning and signal processing. We extend the framework to cover general non-strongly-convex regularizers, including L1-regularized problems like lasso, sparse logistic regression, and elastic net regularization, and show how earlier work can be derived as a special case. We provide convergence guarantees for the class of convex regularized loss minimization objectives, leveraging a novel approach in handling non-strongly-convex regularizers and non-smooth loss functions. The resulting framework has markedly improved performance over state-of-the-art methods, as we illustrate with an extensive set of experiments on real distributed datasets