A multiresolution framework for local similarity based image denoising

In this paper, we present a generic framework for denoising of images corrupted with additive white Gaussian noise based on the idea of regional similarity. The proposed framework employs a similarity function using the distance between pixels in a multidimensional feature space, whereby multiple feature maps describing various local regional characteristics can be utilized, giving higher weight to pixels having similar regional characteristics. An extension of the proposed framework into a multiresolution setting using wavelets and scale space is presented. It is shown that the resulting multiresolution multilateral (MRM) filtering algorithm not only eliminates the coarse-grain noise but can also faithfully reconstruct anisotropic features, particularly in the presence of high levels of noise

The neural bases of event monitoring across domains: a simultaneous ERP-fMRI study.

The ability to check and evaluate the environment over time with the aim to detect the occurrence of target stimuli is supported by sustained/tonic as well as transient/phasic control processes, which overall might be referred to as event monitoring. The neural underpinning of sustained control processes involves a fronto-parietal network. However, it has not been well-defined yet whether this cortical circuit acts irrespective of the specific material to be monitored and whether this mediates sustained as well as transient monitoring processes. In the current study, the functional activity of brain during an event monitoring task was investigated and compared between two cognitive domains, whose processing is mediated by differently lateralized areas. Namely, participants were asked to monitor sequences of either faces (supported by right-hemisphere regions) or tools (left-hemisphere). In order to disentangle sustained from transient components of monitoring, a simultaneous EEG-fMRI technique was adopted within a block design. When contrasting monitoring versus control blocks, the conventional fMRI analysis revealed the sustained involvement of bilateral fronto-parietal regions, in both task domains. Event-related potentials (ERPs) showed a more positive amplitude over frontal sites in monitoring compared to control blocks, providing evidence of a transient monitoring component. The joint ERP-fMRI analysis showed that, in the case of face monitoring, these transient processes rely on right-lateralized areas, including the inferior parietal lobule and the middle frontal gyrus. In the case of tools, no fronto-parietal areas correlated with the transient ERP activity, suggesting that in this domain phasic monitoring processes were masked by tonic ones. Overall, the present findings highlight the role of bilateral fronto-parietal regions in sustained monitoring, independently of the specific task requirements, and suggest that right-lateralized areas subtend transient monitoring processes, at least in some task contexts

A new method for improved standardisation in three-dimensional computed tomography cephalometry

Interest for three-dimensional computed tomography cephalometry has risen over the last two decades. Current methods commonly rely on the examiner to manually point-pick the landmarks and/or orientate the skull. In this study, a new approach is presented, in which landmarks are calculated after selection of the landmark region on a triangular model and in which the skull is automatically orientated in a standardised way. Two examiners each performed five analyses on three skull models. Landmark reproducibility was tested by calculating the standard deviation for each observer and the difference between the mean values of both observers. The variation can be limited to 0.1 mm for most landmarks. However, some landmarks perform less well and require further investigation. With the proposed reference system, a symmetrical orientation of the skulls is obtained. The presented methods contribute to standardisation in cephalometry and could therefore allow improved comparison of patient data

On symmetry in visual perception

This thesis is concerned with the role of symmetry in low-level image segmentation. Early detection of local image properties that could indicate the presence of an object would be useful in segmentation, and it is proposed here that approximate bilateral symmetry, which is common to many natural and man made objects, is a candidate local property. To be useful in low-level image segmentation the representation of symmetry must be relatively robust to noise interference, and the symmetry must be detectable without prior knowledge of the location and orientation of the pattern axis. The experiments reported here investigated whether bilateral symmetry can be detected with and without knowledge of the axis of symmetry, in several different types of pattern. The pattern properties found to aid symmetry detection in random dot patterns were the presence of compound features, formed from locally dense clusters of dots, and contrast uniformity across the axis. In the second group of experiments, stimuli were designed to enhance the features found to be important for global symmetry detection. The pattern elements were enlarged, and grey level was varied between matched pairs, thereby making each pair distinctive. Symmetry detection was found to be robust to variation in the size of matched elements, but was disrupted by contrast variation within pairs. It was concluded that the global pattern structure is contained in the parallelism between extended, cross axis regions of uniform contrast. In the third group of experiments, detection performance was found to improve when the parallel structure was strengthened by the presence of matched strings, rather than pairs of elements. It is argued that elongation, parallelism, and approximate alignment between pattern constituents are visual properties that are both presegmentally detectable, and sufficient for the representation of global symmetric structure. A simple computational property of these patterns is described

Modeling brain dynamics in brain tumor patients using the virtual brain

Presurgical planning for brain tumor resection aims at delineating eloquent tissue in the vicinity of the lesion to spare during surgery. To this end, noninvasive neuroimaging techniques such as functional MRI and diffusion-weighted imaging fiber tracking are currently employed. However, taking into account this information is often still insufficient, as the complex nonlinear dynamics of the brain impede straightforward prediction of functional outcome after surgical intervention. Large-scale brain network modeling carries the potential to bridge this gap by integrating neuroimaging data with biophysically based models to predict collective brain dynamics. As a first step in this direction, an appropriate computational model has to be selected, after which suitable model parameter values have to be determined. To this end, we simulated large-scale brain dynamics in 25 human brain tumor patients and 11 human control participants using The Virtual Brain, an open-source neuroinformatics platform. Local and global model parameters of the Reduced Wong-Wang model were individually optimized and compared between brain tumor patients and control subjects. In addition, the relationship between model parameters and structural network topology and cognitive performance was assessed. Results showed (1) significantly improved prediction accuracy of individual functional connectivity when using individually optimized model parameters; (2) local model parameters that can differentiate between regions directly affected by a tumor, regions distant from a tumor, and regions in a healthy brain; and (3) interesting associations between individually optimized model parameters and structural network topology and cognitive performance

Grounding semantics in robots for Visual Question Answering

In this thesis I describe an operational implementation of an object detection and description system that incorporates in an end-to-end Visual Question Answering system and evaluated it on two visual question answering datasets for compositional language and elementary visual reasoning

Adaptive kernel estimation for enhanced filtering and pattern classification of magnetic resonance imaging: novel techniques for evaluating the biomechanics and pathologic conditions of the lumbar spine

This dissertation investigates the contribution the lumbar spine musculature has on etiological and pathogenic characteristics of low back pain and lumbar spondylosis. This endeavor necessarily required a two-step process: 1) design of an accurate post-processing method for extracting relevant information via magnetic resonance images and 2) determine pathological trends by elucidating high-dimensional datasets through multivariate pattern classification. The lumbar musculature was initially evaluated by post-processing and segmentation of magnetic resonance (MR) images of the lumbar spine, which characteristically suffer from nonlinear corruption of the signal intensity. This so called intensity inhomogeneity degrades the efficacy of traditional intensity-based segmentation algorithms. Proposed in this dissertation is a solution for filtering individual MR images by extracting a map of the underlying intensity inhomogeneity to adaptively generate local estimates of the kernel’s optimal bandwidth. The adaptive kernel is implemented and tested within the structure of the non-local means filter, but also generalized and extended to the Gaussian and anisotropic diffusion filters. Testing of the proposed filters showed that the adaptive kernel significantly outperformed their non-adaptive counterparts. A variety of performance metrics were utilized to measure either fine feature preservation or accuracy of post-processed segmentation. Based on these metrics the adaptive filters proposed in this dissertation significantly outperformed the non-adaptive versions. Using the proposed filter, the MR data was semi-automatically segmented to delineate between adipose and lean muscle tissues. Two important findings were reached utilizing this data. First, a clear distinction between the musculature of males and females was established that provided 100% accuracy in being able to predict gender. Second, degenerative lumbar spines were accurately predicted at a rate of up to 92% accuracy. These results solidify prior assumptions made regarding sexual dimorphic anatomy and the pathogenic nature of degenerative spine disease