Knowledge Rich Natural Language Queries over Structured Biological Databases

Increasingly, keyword, natural language and NoSQL queries are being used for information retrieval from traditional as well as non-traditional databases such as web, document, image, GIS, legal, and health databases. While their popularity are undeniable for obvious reasons, their engineering is far from simple. In most part, semantics and intent preserving mapping of a well understood natural language query expressed over a structured database schema to a structured query language is still a difficult task, and research to tame the complexity is intense. In this paper, we propose a multi-level knowledge-based middleware to facilitate such mappings that separate the conceptual level from the physical level. We augment these multi-level abstractions with a concept reasoner and a query strategy engine to dynamically link arbitrary natural language querying to well defined structured queries. We demonstrate the feasibility of our approach by presenting a Datalog based prototype system, called BioSmart, that can compute responses to arbitrary natural language queries over arbitrary databases once a syntactic classification of the natural language query is made

Bridging the Semantic Gap with SQL Query Logs in Natural Language Interfaces to Databases

A critical challenge in constructing a natural language interface to database (NLIDB) is bridging the semantic gap between a natural language query (NLQ) and the underlying data. Two specific ways this challenge exhibits itself is through keyword mapping and join path inference. Keyword mapping is the task of mapping individual keywords in the original NLQ to database elements (such as relations, attributes or values). It is challenging due to the ambiguity in mapping the user's mental model and diction to the schema definition and contents of the underlying database. Join path inference is the process of selecting the relations and join conditions in the FROM clause of the final SQL query, and is difficult because NLIDB users lack the knowledge of the database schema or SQL and therefore cannot explicitly specify the intermediate tables and joins needed to construct a final SQL query. In this paper, we propose leveraging information from the SQL query log of a database to enhance the performance of existing NLIDBs with respect to these challenges. We present a system Templar that can be used to augment existing NLIDBs. Our extensive experimental evaluation demonstrates the effectiveness of our approach, leading up to 138% improvement in top-1 accuracy in existing NLIDBs by leveraging SQL query log information.Comment: Accepted to IEEE International Conference on Data Engineering (ICDE) 201

Integrating Distributed Sources of Information for Construction Cost Estimating using Semantic Web and Semantic Web Service technologies

A construction project requires collaboration of several organizations such as owner, designer, contractor, and material supplier organizations. These organizations need to exchange information to enhance their teamwork. Understanding the information received from other organizations requires specialized human resources. Construction cost estimating is one of the processes that requires information from several sources including a building information model (BIM) created by designers, estimating assembly and work item information maintained by contractors, and construction material cost data provided by material suppliers. Currently, it is not easy to integrate the information necessary for cost estimating over the Internet. This paper discusses a new approach to construction cost estimating that uses Semantic Web technology. Semantic Web technology provides an infrastructure and a data modeling format that enables accessing, combining, and sharing information over the Internet in a machine processable format. The estimating approach presented in this paper relies on BIM, estimating knowledge, and construction material cost data expressed in a web ontology language. The approach presented in this paper makes the various sources of estimating data accessible as Simple Protocol and Resource Description Framework Query Language (SPARQL) endpoints or Semantic Web Services. We present an estimating application that integrates distributed information provided by project designers, contractors, and material suppliers for preparing cost estimates. The purpose of this paper is not to fully automate the estimating process but to streamline it by reducing human involvement in repetitive cost estimating activities

A Framework for XML-based Integration of Data, Visualization and Analysis in a Biomedical Domain

Biomedical data are becoming increasingly complex and heterogeneous in nature. The data are stored in distributed information systems, using a variety of data models, and are processed by increasingly more complex tools that analyze and visualize them. We present in this paper our framework for integrating biomedical research data and tools into a unique Web front end. Our framework is applied to the University of Washington’s Human Brain Project. Specifically, we present solutions to four integration tasks: definition of complex mappings from relational sources to XML, distributed XQuery processing, generation of heterogeneous output formats, and the integration of heterogeneous data visualization and analysis tools

MeLinDa: an interlinking framework for the web of data

The web of data consists of data published on the web in such a way that they can be interpreted and connected together. It is thus critical to establish links between these data, both for the web of data and for the semantic web that it contributes to feed. We consider here the various techniques developed for that purpose and analyze their commonalities and differences. We propose a general framework and show how the diverse techniques fit in the framework. From this framework we consider the relation between data interlinking and ontology matching. Although, they can be considered similar at a certain level (they both relate formal entities), they serve different purposes, but would find a mutual benefit at collaborating. We thus present a scheme under which it is possible for data linking tools to take advantage of ontology alignments.Comment: N° RR-7691 (2011