67,988 research outputs found
Ontology-based knowledge representation of experiment metadata in biological data mining
According to the PubMed resource from the U.S. National Library of Medicine,
over 750,000 scientific articles have been published in the ~5000 biomedical journals
worldwide in the year 2007 alone. The vast majority of these publications include results from hypothesis-driven experimentation in overlapping biomedical research domains. Unfortunately, the sheer volume of information being generated by the biomedical research enterprise has made it virtually impossible for investigators to stay aware of the latest findings in their domain of interest, let alone to be able to assimilate and mine data from related investigations for purposes of meta-analysis. While computers have the potential for assisting investigators in the extraction, management and analysis of these data, information contained in the traditional journal publication is still largely unstructured, free-text descriptions of study design, experimental application and results interpretation, making it difficult for computers to gain access to the content of what is being conveyed without significant manual intervention. In order to circumvent these roadblocks and make the most of the output from the biomedical research enterprise, a variety of related standards in knowledge representation are being developed, proposed and adopted in the biomedical community. In this chapter, we will explore the current status of efforts to develop minimum information standards for the representation of a biomedical experiment, ontologies composed of shared vocabularies assembled into subsumption hierarchical structures, and extensible relational data models that link the information components together in a machine-readable and human-useable framework for data mining purposes
Populous: A tool for populating ontology templates
We present Populous, a tool for gathering content with which to populate an
ontology. Domain experts need to add content, that is often repetitive in its
form, but without having to tackle the underlying ontological representation.
Populous presents users with a table based form in which columns are
constrained to take values from particular ontologies; the user can select a
concept from an ontology via its meaningful label to give a value for a given
entity attribute. Populated tables are mapped to patterns that can then be used
to automatically generate the ontology's content. Populous's contribution is in
the knowledge gathering stage of ontology development. It separates knowledge
gathering from the conceptualisation and also separates the user from the
standard ontology authoring environments. As a result, Populous can allow
knowledge to be gathered in a straight-forward manner that can then be used to
do mass production of ontology content.Comment: in Adrian Paschke, Albert Burger begin_of_the_skype_highlighting
end_of_the_skype_highlighting, Andrea Splendiani, M. Scott Marshall, Paolo
Romano: Proceedings of the 3rd International Workshop on Semantic Web
Applications and Tools for the Life Sciences, Berlin,Germany, December 8-10,
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Towards a Semantic-based Approach for Modeling Regulatory Documents in Building Industry
Regulations in the Building Industry are becoming increasingly complex and
involve more than one technical area. They cover products, components and
project implementation. They also play an important role to ensure the quality
of a building, and to minimize its environmental impact. In this paper, we are
particularly interested in the modeling of the regulatory constraints derived
from the Technical Guides issued by CSTB and used to validate Technical
Assessments. We first describe our approach for modeling regulatory constraints
in the SBVR language, and formalizing them in the SPARQL language. Second, we
describe how we model the processes of compliance checking described in the
CSTB Technical Guides. Third, we show how we implement these processes to
assist industrials in drafting Technical Documents in order to acquire a
Technical Assessment; a compliance report is automatically generated to explain
the compliance or noncompliance of this Technical Documents
Knowledge-based systems and geological survey
This personal and pragmatic review of the philosophy underpinning methods of geological surveying suggests that important influences of information technology have yet to make their impact. Early approaches took existing systems as metaphors, retaining the separation of maps, map explanations and information archives, organised around map sheets of fixed boundaries, scale and content. But system design should look ahead: a computer-based knowledge system for the same purpose can be built around hierarchies of spatial objects and their relationships, with maps as one means of visualisation, and information types linked as hypermedia and integrated in mark-up languages. The system framework and ontology, derived from the general geoscience model, could support consistent representation of the underlying concepts and maintain reference information on object classes and their behaviour. Models of processes and historical configurations could clarify the reasoning at any level of object detail and introduce new concepts such as complex systems. The up-to-date interpretation might centre on spatial models, constructed with explicit geological reasoning and evaluation of uncertainties. Assuming (at a future time) full computer support, the field survey results could be collected in real time as a multimedia stream, hyperlinked to and interacting with the other parts of the system as appropriate. Throughout, the knowledge is seen as human knowledge, with interactive computer support for recording and storing the information and processing it by such means as interpolating, correlating, browsing, selecting, retrieving, manipulating, calculating, analysing, generalising, filtering, visualising and delivering the results. Responsibilities may have to be reconsidered for various aspects of the system, such as: field surveying; spatial models and interpretation; geological processes, past configurations and reasoning; standard setting, system framework and ontology maintenance; training; storage, preservation, and dissemination of digital records
Towards a re-engineering method for web services architectures
Recent developments in Web technologies â in particular
through the Web services framework â have greatly enhanced the flexible and interoperable implementation of service-oriented software architectures. Many older Web-based and other distributed software systems will be re-engineered to a Web services-oriented platform. Using an advanced
e-learning system as our case study, we investigate central aspects of a re-engineering approach for the Web services platform. Since our aim is to provide components of the legacy system also as services in the new platform, re-engineering to suit the new development paradigm is as important as re-engineering to suit the new architectural requirements
Logical operators for ontological modeling
We show that logic has more to offer to ontologists than standard first order
and modal operators. We first describe some operators of linear logic which we
believe are particularly suitable for ontological modeling, and suggest how to interpret
them within an ontological framework. After showing how they can coexist
with those of classical logic, we analyze three notions of artifact from the literature
to conclude that these linear operators allow for reducing the ontological commitment
needed for their formalization, and even simplify their logical formulation
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Ontological Foundations for Scholarly Debate Mapping Technology
Mapping scholarly debates is an important genre of what can be called Knowledge Domain Analytics (KDA) technology â i.e. technology which combines both quantitative and qualitative methods of analysing specialist knowledge domains. However, current KDA technology research has emerged from diverse traditions and thus lacks a common conceptual foundation. This paper reports on the design of a KDA ontology that aims to provide this foundation. The paper then describes the argumentation extensions to the ontology for supporting scholarly debate mapping as a special form of KDA and demonstrates its expressive capabilities using a case study debate
Metadata Augmentation for Semantic- and Context- Based Retrieval of Digital Cultural Objects
Cultural objects are increasingly stored and generated in digital form, yet effective methods for their indexing and retrieval still remain an open area of research. The main problem arises from the disconnection between the content-based indexing approach used by computer scientists and the description-based approach used by information scientists. There is also a lack of representational schemes that allow the alignment of the semantics and context with keywords and low-level features that can be automatically extracted from the content of these cultural objects. This paper presents an integrated approach to address these problems, taking advantage of both computer science and information science approaches. The focus is on the rationale and conceptual design of the system and its various components. In particular, we discuss techniques for augmenting commonly used metadata with visual features and domain knowledge to generate high-level abstract metadata which in turn can be used for semantic and context-based indexing and retrieval. We use a sample collection of Vietnamese traditional woodcuts to demonstrate the usefulness of this approach
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