Exploiting gan as an oversampling method for imbalanced data augmentation with application to the fault diagnosis of an industrial robot

O diagnóstico inteligente de falhas baseado em aprendizagem máquina geralmente requer um conjunto de dados balanceados para produzir um desempenho aceitável. No entanto, a obtenção de dados quando o equipamento industrial funciona com falhas é uma tarefa desafiante, resultando frequentemente num desequilíbrio entre dados obtidos em condições nominais e com falhas. As técnicas de aumento de dados são das abordagens mais promissoras para mitigar este problema. Redes adversárias generativas (GAN) são um tipo de modelo generativo que consiste de um módulo gerador e de um discriminador. Por meio de aprendizagem adversária entre estes módulos, o gerador otimizado pode produzir padrões sintéticos que podem ser usados para amumento de dados. Investigamos se asGANpodem ser usadas como uma ferramenta de sobre amostra- -gem para compensar um conjunto de dados desequilibrado em uma tarefa de diagnóstico de falhas num manipulador robótico industrial. Realizaram-se uma série de experiências para validar a viabilidade desta abordagem. A abordagem é comparada com seis cenários, incluindo o método clássico de sobre amostragem SMOTE. Os resultados mostram que a GAN supera todos os cenários comparados. Para mitigar dois problemas reconhecidos no treino das GAN, ou seja, instabilidade de treino e colapso de modo, é proposto o seguinte. Propomos uma generalização da GAN de erro quadrado médio (MSE GAN) da Wasserstein GAN com penalidade de gradiente (WGAN-GP), referida como VGAN (GAN baseado numa matriz V) para mitigar a instabilidade de treino. Além disso, propomos um novo critério para rastrear o modelo mais adequado durante o treino. Experiências com o MNIST e no conjunto de dados do manipulador robótico industrial mostram que o VGAN proposto supera outros modelos competitivos. A rede adversária generativa com consistência de ciclo (CycleGAN) visa lidar com o colapso de modo, uma condição em que o gerador produz pouca ou nenhuma variabilidade. Investigamos a distância fatiada de Wasserstein (SWD) na CycleGAN. O SWD é avaliado tanto no CycleGAN incondicional quanto no CycleGAN condicional com e sem mecanismos de compressão e excitação. Mais uma vez, dois conjuntos de dados são avaliados, ou seja, o MNIST e o conjunto de dados do manipulador robótico industrial. Os resultados mostram que o SWD tem menor custo computacional e supera o CycleGAN convencional.Machine learning based intelligent fault diagnosis often requires a balanced data set for yielding an acceptable performance. However, obtaining faulty data from industrial equipment is challenging, often resulting in an imbalance between data acquired in normal conditions and data acquired in the presence of faults. Data augmentation techniques are among the most promising approaches to mitigate such issue. Generative adversarial networks (GAN) are a type of generative model consisting of a generator module and a discriminator. Through adversarial learning between these modules, the optimised generator can produce synthetic patterns that can be used for data augmentation. We investigate whether GAN can be used as an oversampling tool to compensate for an imbalanced data set in an industrial robot fault diagnosis task. A series of experiments are performed to validate the feasibility of this approach. The approach is compared with six scenarios, including the classical oversampling method (SMOTE). Results show that GAN outperforms all the compared scenarios. To mitigate two recognised issues in GAN training, i.e., instability and mode collapse, the following is proposed. We proposed a generalization of both mean sqaure error (MSE GAN) and Wasserstein GAN with gradient penalty (WGAN-GP), referred to as VGAN (the V-matrix based GAN) to mitigate training instability. Also, a novel criterion is proposed to keep track of the most suitable model during training. Experiments on both the MNIST and the industrial robot data set show that the proposed VGAN outperforms other competitive models. Cycle consistency generative adversarial network (CycleGAN) is aiming at dealing with mode collapse, a condition where the generator yields little to none variability. We investigate the sliced Wasserstein distance (SWD) for CycleGAN. SWD is evaluated in both the unconditional CycleGAN and the conditional CycleGAN with and without squeeze-and-excitation mechanisms. Again, two data sets are evaluated, i.e., the MNIST and the industrial robot data set. Results show that SWD has less computational cost and outperforms conventional CycleGAN

Medical imaging analysis with artificial neural networks

Given that neural networks have been widely reported in the research community of medical imaging, we provide a focused literature survey on recent neural network developments in computer-aided diagnosis, medical image segmentation and edge detection towards visual content analysis, and medical image registration for its pre-processing and post-processing, with the aims of increasing awareness of how neural networks can be applied to these areas and to provide a foundation for further research and practical development. Representative techniques and algorithms are explained in detail to provide inspiring examples illustrating: (i) how a known neural network with fixed structure and training procedure could be applied to resolve a medical imaging problem; (ii) how medical images could be analysed, processed, and characterised by neural networks; and (iii) how neural networks could be expanded further to resolve problems relevant to medical imaging. In the concluding section, a highlight of comparisons among many neural network applications is included to provide a global view on computational intelligence with neural networks in medical imaging

Automating assessment of human embryo images and time-lapse sequences for IVF treatment

As the number of couples using In Vitro Fertilization (IVF) treatment to give birth increases, so too does the need for robust tools to assist embryologists in selecting the highest quality embryos for implantation. Quality scores assigned to embryonic structures are critical markers for predicting implantation potential of human blastocyst-stage embryos. Timing at which embryos reach certain cell and development stages in vitro also provides valuable information about their development progress and potential to become a positive pregnancy. The current workflow of grading blastocysts by visual assessment is susceptible to subjectivity between embryologists. Visually verifying when embryo cell stage increases is tedious and confirming onset of later development stages is also prone to subjective assessment. This thesis proposes methods to automate embryo image and time-lapse sequence assessment to provide objective evaluation of blastocyst structure quality, cell counting, and timing of development stages

Predictive Modelling Approach to Data-Driven Computational Preventive Medicine

This thesis contributes novel predictive modelling approaches to data-driven computational preventive medicine and offers an alternative framework to statistical analysis in preventive medicine research. In the early parts of this research, this thesis presents research by proposing a synergy of machine learning methods for detecting patterns and developing inexpensive predictive models from healthcare data to classify the potential occurrence of adverse health events. In particular, the data-driven methodology is founded upon a heuristic-systematic assessment of several machine-learning methods, data preprocessing techniques, models’ training estimation and optimisation, and performance evaluation, yielding a novel computational data-driven framework, Octopus. Midway through this research, this thesis advances research in preventive medicine and data mining by proposing several new extensions in data preparation and preprocessing. It offers new recommendations for data quality assessment checks, a novel multimethod imputation (MMI) process for missing data mitigation, a novel imbalanced resampling approach, and minority pattern reconstruction (MPR) led by information theory. This thesis also extends the area of model performance evaluation with a novel classification performance ranking metric called XDistance. In particular, the experimental results show that building predictive models with the methods guided by our new framework (Octopus) yields domain experts' approval of the new reliable models’ performance. Also, performing the data quality checks and applying the MMI process led healthcare practitioners to outweigh predictive reliability over interpretability. The application of MPR and its hybrid resampling strategies led to better performances in line with experts' success criteria than the traditional imbalanced data resampling techniques. Finally, the use of the XDistance performance ranking metric was found to be more effective in ranking several classifiers' performances while offering an indication of class bias, unlike existing performance metrics The overall contributions of this thesis can be summarised as follow. First, several data mining techniques were thoroughly assessed to formulate the new Octopus framework to produce new reliable classifiers. In addition, we offer a further understanding of the impact of newly engineered features, the physical activity index (PAI) and biological effective dose (BED). Second, the newly developed methods within the new framework. Finally, the newly accepted developed predictive models help detect adverse health events, namely, visceral fat-associated diseases and advanced breast cancer radiotherapy toxicity side effects. These contributions could be used to guide future theories, experiments and healthcare interventions in preventive medicine and data mining

Family names as indicators of Britain’s changing regional geography

In recent years the geography of surnames has become increasingly researched in genetics, epidemiology, linguistics and geography. Surnames provide a useful data source for the analysis of population structure, migrations, genetic relationships and levels of cultural diffusion and interaction between communities. The Worldnames database (www.publicprofiler.org/worldnames) of 300 million people from 26 countries georeferenced in many cases to the equivalent of UK Postcode level provides a rich source of surname data. This work has focused on the UK component of this dataset, that is the 2001 Enhanced Electoral Role, georeferenced to Output Area level. Exploratory analysis of the distribution of surnames across the UK shows that clear regions exist, such as Cornwall, Central Wales and Scotland, in agreement with anecdotal evidence. This study is concerned with applying a wide range of methods to the UK dataset to test their sensitivity and consistency to surname regions. Methods used thus far are hierarchical and non-hierarchical clustering, barrier algorithms, such as the Monmonier Algorithm, and Multidimensional Scaling. These, to varying degrees, have highlighted the regionality of UK surnames and provide strong foundations to future work and refinement in the UK context. Establishing a firm methodology has enabled comparisons to be made with data from the Great British 1881 census, developing insights into population movements from within and outside Great Britain

Detecting single-trial EEG evoked potential using a wavelet domain linear mixed model: application to error potentials classification

Objective. The main goal of this work is to develop a model for multi-sensor signals such as MEG or EEG signals, that accounts for the inter-trial variability, suitable for corresponding binary classification problems. An important constraint is that the model be simple enough to handle small size and unbalanced datasets, as often encountered in BCI type experiments. Approach. The method involves linear mixed effects statistical model, wavelet transform and spatial filtering, and aims at the characterization of localized discriminant features in multi-sensor signals. After discrete wavelet transform and spatial filtering, a projection onto the relevant wavelet and spatial channels subspaces is used for dimension reduction. The projected signals are then decomposed as the sum of a signal of interest (i.e. discriminant) and background noise, using a very simple Gaussian linear mixed model. Main results. Thanks to the simplicity of the model, the corresponding parameter estimation problem is simplified. Robust estimates of class-covariance matrices are obtained from small sample sizes and an effective Bayes plug-in classifier is derived. The approach is applied to the detection of error potentials in multichannel EEG data, in a very unbalanced situation (detection of rare events). Classification results prove the relevance of the proposed approach in such a context. Significance. The combination of linear mixed model, wavelet transform and spatial filtering for EEG classification is, to the best of our knowledge, an original approach, which is proven to be effective. This paper improves on earlier results on similar problems, and the three main ingredients all play an important role

Interpretable Machine Learning Model for Clinical Decision Making

Despite machine learning models being increasingly used in medical decision-making and meeting classification predictive accuracy standards, they remain untrusted black-boxes due to decision-makers\u27 lack of insight into their complex logic. Therefore, it is necessary to develop interpretable machine learning models that will engender trust in the knowledge they generate and contribute to clinical decision-makers intention to adopt them in the field. The goal of this dissertation was to systematically investigate the applicability of interpretable model-agnostic methods to explain predictions of black-box machine learning models for medical decision-making. As proof of concept, this study addressed the problem of predicting the risk of emergency readmissions within 30 days of being discharged for heart failure patients. Using a benchmark data set, supervised classification models of differing complexity were trained to perform the prediction task. More specifically, Logistic Regression (LR), Random Forests (RF), Decision Trees (DT), and Gradient Boosting Machines (GBM) models were constructed using the Healthcare Cost and Utilization Project (HCUP) Nationwide Readmissions Database (NRD). The precision, recall, area under the ROC curve for each model were used to measure predictive accuracy. Local Interpretable Model-Agnostic Explanations (LIME) was used to generate explanations from the underlying trained models. LIME explanations were empirically evaluated using explanation stability and local fit (R2). The results demonstrated that local explanations generated by LIME created better estimates for Decision Trees (DT) classifiers

Machine Learning-Based Rockfalls Detection with 3D Point Clouds, Example in the Montserrat Massif (Spain)

Rock slope monitoring using 3D point cloud data allows the creation of rockfall inventories, provided that an efficient methodology is available to quantify the activity. However, monitoring with high temporal and spatial resolution entails the processing of a great volume of data, which can become a problem for the processing system. The standard methodology for monitoring includes the steps of data capture, point cloud alignment, the measure of differences, clustering differences, and identification of rockfalls. In this article, we propose a new methodology adapted from existing algorithms (multiscale model to model cloud comparison and density-based spatial clustering of applications with noise algorithm) and machine learning techniques to facilitate the identification of rockfalls from compared temporary 3D point clouds, possibly the step with most user interpretation. Point clouds are processed to generate 33 new features related to the rock cliff differences, predominant differences, or orientation for classification with 11 machine learning models, combined with 2 undersampling and 13 oversampling methods. The proposed methodology is divided into two software packages: point cloud monitoring and cluster classification. The prediction model applied in two study cases in the Montserrat conglomeratic massif (Barcelona, Spain) reveal that a reduction of 98% in the initial number of clusters is sufficient to identify the totality of rockfalls in the first case study. The second case study requires a 96% reduction to identify 90% of the rockfalls, suggesting that the homogeneity of the rockfall characteristics is a key factor for the correct prediction of the machine learning models

Fusion of fMRI and Non-Imaging Data for ADHD Classification

Resting state fMRI has emerged as a popular neuroimaging method for automated recognition and classification of different brain disorders. Attention Deficit Hyperactivity Disorder (ADHD) is one of the most common brain disorders affecting young children, yet its underlying mechanism is not completely understood and its diagnosis is mainly dependent on behavior analysis. This paper addresses the problem of classification of ADHD based on resting state fMRI and proposes a machine learning framework with integration of non-imaging data with imaging data to investigate functional connectivity alterations between ADHD and control subjects (not diagnosed with ADHD). Our aim is to apply computational techniques to (1) automatically classify a subject as ADHD or control, (2) identify differences in functional connectivity of these two groups and (3) evaluate the importance of fusing non-imaging with imaging data for classification. In the first stage of our framework, we determine the functional connectivity of brain regions by grouping brain activity using clustering algorithms. Next, we employ Elastic Net based feature selection to select the most discriminant features from the dense functional brain network and integrate non-imaging data. Finally, a Support Vector Machine classifier is trained to classify ADHD subjects vs. control. The proposed framework was evaluated on a public ADHD-200 dataset, and our results suggests that fusion of non-imaging data improves the performance of the framework. Classification results outperform the state-of-the-art on some subsets of the data

Real-time head movement tracking through earables in moving vehicles

Abstract. The Internet of Things is enabling innovations in the automotive industry by expanding the capabilities of vehicles by connecting them with the cloud. One important application domain is traffic safety, which can benefit from monitoring the driver’s condition to see if they are capable of safely handling the vehicle. By detecting drowsiness, inattentiveness, and distraction of the driver it is possible to react before accidents happen. This thesis explores how accelerometer and gyroscope data collected using earables can be used to classify the orientation of the driver’s head in a moving vehicle. It is found that machine learning algorithms such as Random Forest and K-Nearest Neighbor can be used to reach fairly accurate classifications even without applying any noise reduction to the signal data. Data cleaning and transformation approaches are studied to see how the models could be improved further. This study paves the way for the development of driver monitoring systems capable of reacting to anomalous driving behavior before traffic accidents can happen