Enhancing Semantic Segmentation: Design and Analysis of Improved U-Net Based Deep Convolutional Neural Networks

In this research, we provide a state-of-the-art method for semantic segmentation that makes use of a modified version of the U-Net architecture, which is itself based on deep convolutional neural networks (CNNs). This research delves into the ins and outs of this cutting-edge approach to semantic segmentation in an effort to boost its precision and productivity. To perform semantic segmentation, a crucial operation in computer vision, each pixel in an image must be assigned to one of many predefined item classes. The proposed Improved U-Net architecture makes use of deep CNNs to efficiently capture complex spatial characteristics while preserving associated context. The study illustrates the efficacy of the Improved U-Net in a variety of real-world circumstances through thorough experimentation and assessment. Intricate feature extraction, down-sampling, and up-sampling are all part of the network's design in order to produce high-quality segmentation results. The study demonstrates comparative evaluations against classic U-Net and other state-of-the-art models and emphasizes the significance of hyperparameter fine-tuning. The suggested architecture shows excellent performance in terms of accuracy and generalization, demonstrating its promise for a variety of applications. Finally, the problem of semantic segmentation is addressed in a novel way. The experimental findings validate the relevance of the architecture's design decisions and demonstrate its potential to boost computer vision by enhancing segmentation precision and efficiency

Automatic liver segmentation on CT images combining region-based techniques and convolutional features

Precise automatic liver segmentation plays an important role in computer-aided diagnosis of liver pathology. Despite many years of research, this is still a challenging task, especially when processing heterogeneous volumetric data from different sources. This study focuses on automatic liver segmentation on CT volumes proposing a fusion approach of traditional methods and neural network prediction masks. First, a region growing based method is proposed, which also applies active contour and thresholding based probability density function. Then the obtained binary mask is combined with the results of the 3D U-Net neural network improved by GrowCut approach. Extensive quantitative evaluation is carried out on three different CT datasets, representing varying image characteristics. The proposed fusion method compensates for the drawbacks of the traditional and U-Net based approach, performs uniformly stable for heterogeneous CT data and its performance is comparable to the state-of-the-art, therefore it provides a promising segmentation alternative

Deep learning-based fully automatic segmentation of the maxillary sinus on cone-beam computed tomographic images

The detection of maxillary sinus wall is important in dental fields such as implant surgery, tooth extraction, and odontogenic disease diagnosis. The accurate segmentation of the maxillary sinus is required as a cornerstone for diagnosis and treatment planning. This study proposes a deep learning-based method for fully automatic segmentation of the maxillary sinus, including clear or hazy states, on cone-beam computed tomographic (CBCT) images. A model for segmentation of the maxillary sinuses was developed using U-Net, a convolutional neural network, and a total of 19,350 CBCT images were used from 90 maxillary sinuses (34 clear sinuses, 56 hazy sinuses). Post-processing to eliminate prediction errors of the U-Net segmentation results increased the accuracy. The average prediction results of U-Net were a dice similarity coefficient (DSC) of 0.9090 ± 0.1921 and a Hausdorff distance (HD) of 2.7013 ± 4.6154. After post-processing, the average results improved to a DSC of 0.9099 ± 0.1914 and an HD of 2.1470 ± 2.2790. The proposed deep learning model with post-processing showed good performance for clear and hazy maxillary sinus segmentation. This model has the potential to help dental clinicians with maxillary sinus segmentation, yielding equivalent accuracy in a variety of cases.ope

Optimal input configuration of dynamic contrast enhanced MRI in convolutional neural networks for liver segmentation

Most MRI liver segmentation methods use a structural 3D scan as input, such as a T1 or T2 weighted scan. Segmentation performance may be improved by utilizing both structural and functional information, as contained in dynamic contrast enhanced (DCE) MR series. Dynamic information can be incorporated in a segmentation method based on convolutional neural networks in a number of ways. In this study, the optimal input configuration of DCE MR images for convolutional neural networks (CNNs) is studied. The performance of three different input configurations for CNNs is studied for a liver segmentation task. The three configurations are I) one phase image of the DCE-MR series as input image; II) the separate phases of the DCE-MR as input images; and III) the separate phases of the DCE-MR as channels of one input image. The three input configurations are fed into a dilated fully convolutional network and into a small U-net. The CNNs were trained using 19 annotated DCE-MR series and tested on another 19 annotated DCE-MR series. The performance of the three input configurations for both networks is evaluated against manual annotations. The results show that both neural networks perform better when the separate phases of the DCE-MR series are used as channels of an input image in comparison to one phase as input image or the separate phases as input images. No significant difference between the performances of the two network architectures was found for the separate phases as channels of an input image.Comment: Submitted to SPIE Medical Imaging 201

Siamese Tracking of Cell Behaviour Patterns

Tracking and segmentation of biological cells in video sequences is a challenging problem, especially due to the similarity of the cells and high levels of inherent noise. Most machine learning-based approaches lack robustness and suffer from sensitivity to less prominent events such as mitosis, apoptosis and cell collisions. Due to the large variance in medical image characteristics, most approaches are dataset-specific and do not generalise well on other datasets. In this paper, we propose a simple end-to-end cascade neural architecture that can effectively model the movement behaviour of biological cells and predict collision and mitosis events. Our approach uses U-Net for an initial segmentation which is then improved through processing by a siamese tracker capable of matching each cell along the temporal axis. By facilitating the re-segmentation of collided and mitotic cells, our method demonstrates its capability to handle volatile trajectories and unpredictable cell locations while being invariant to cell morphology. We demonstrate that our tracking approach achieves state-of-the-art results on PhC-C2DL-PSC and Fluo-N2DH-SIM+ datasets and ranks second on the DIC-C2DH-HeLa dataset of the cell tracking challenge benchmarks