Trace-based Performance Analysis for Hardware Accelerators

This thesis presents how performance data from hardware accelerators can be included in event logs. It extends the capabilities of trace-based performance analysis to also monitor and record data from this novel parallelization layer. The increasing awareness to power consumption of computing devices has led to an interest in hybrid computing architectures as well. High-end computers, workstations, and mobile devices start to employ hardware accelerators to offload computationally intense and parallel tasks, while at the same time retaining a highly efficient scalar compute unit for non-parallel tasks. This execution pattern is typically asynchronous so that the scalar unit can resume other work while the hardware accelerator is busy. Performance analysis tools provided by the hardware accelerator vendors cover the situation of one host using one device very well. Yet, they do not address the needs of the high performance computing community. This thesis investigates ways to extend existing methods for recording events from highly parallel applications to also cover scenarios in which hardware accelerators aid these applications. After introducing a generic approach that is suitable for any API based acceleration paradigm, the thesis derives a suggestion for a generic performance API for hardware accelerators and its implementation with NVIDIA CUPTI. In a next step the visualization of event logs containing data from execution streams on different levels of parallelism is discussed. In order to overcome the limitations of classic performance profiles and timeline displays, a graph-based visualization using Parallel Performance Flow Graphs (PPFGs) is introduced. This novel technical approach is using program states in order to display similarities and differences between the potentially very large number of event streams and, thus, enables a fast way to spot load imbalances. The thesis concludes with the in-depth analysis of a case-study of PIConGPU---a highly parallel, multi-hybrid plasma physics simulation---that benefited greatly from the developed performance analysis methods.Diese Dissertation zeigt, wie der Ablauf von Anwendungsteilen, die auf Hardwarebeschleuniger ausgelagert wurden, als Programmspur mit aufgezeichnet werden kann. Damit wird die bekannte Technik der Leistungsanalyse von Anwendungen mittels Programmspuren so erweitert, dass auch diese neue Parallelitätsebene mit erfasst wird. Die Beschränkungen von Computersystemen bezüglich der elektrischen Leistungsaufnahme hat zu einer steigenden Anzahl von hybriden Computerarchitekturen geführt. Sowohl Hochleistungsrechner, aber auch Arbeitsplatzcomputer und mobile Endgeräte nutzen heute Hardwarebeschleuniger um rechenintensive, parallele Programmteile auszulagern und so den skalaren Hauptprozessor zu entlasten und nur für nicht parallele Programmteile zu verwenden. Dieses Ausführungsschema ist typischerweise asynchron: der Skalarprozessor kann, während der Hardwarebeschleuniger rechnet, selbst weiterarbeiten. Die Leistungsanalyse-Werkzeuge der Hersteller von Hardwarebeschleunigern decken den Standardfall (ein Host-System mit einem Hardwarebeschleuniger) sehr gut ab, scheitern aber an einer Unterstützung von hochparallelen Rechnersystemen. Die vorliegende Dissertation untersucht, in wie weit auch multi-hybride Anwendungen die Aktivität von Hardwarebeschleunigern aufzeichnen können. Dazu wird die vorhandene Methode zur Erzeugung von Programmspuren für hochparallele Anwendungen entsprechend erweitert. In dieser Untersuchung wird zuerst eine allgemeine Methodik entwickelt, mit der sich für jede API-gestützte Hardwarebeschleunigung eine Programmspur erstellen lässt. Darauf aufbauend wird eine eigene Programmierschnittstelle entwickelt, die es ermöglicht weitere leistungsrelevante Daten aufzuzeichnen. Die Umsetzung dieser Schnittstelle wird am Beispiel von NVIDIA CUPTI darstellt. Ein weiterer Teil der Arbeit beschäftigt sich mit der Darstellung von Programmspuren, welche Aufzeichnungen von den unterschiedlichen Parallelitätsebenen enthalten. Um die Einschränkungen klassischer Leistungsprofile oder Zeitachsendarstellungen zu überwinden, wird mit den parallelen Programmablaufgraphen (PPFGs) eine neue graphenbasisierte Darstellungsform eingeführt. Dieser neuartige Ansatz zeigt eine Programmspur als eine Folge von Programmzuständen mit gemeinsamen und unterchiedlichen Abläufen. So können divergierendes Programmverhalten und Lastimbalancen deutlich einfacher lokalisiert werden. Die Arbeit schließt mit der detaillierten Analyse von PIConGPU -- einer multi-hybriden Simulation aus der Plasmaphysik --, die in großem Maße von den in dieser Arbeit entwickelten Analysemöglichkeiten profiert hat

Dosimetry of Photon and Proton MRI Guided Radiotherapy Beams using Silicon Array Dosimeters

The integration of online magnetic resonance imaging (MRI) with photon and pro-ton radiotherapy has potential to overcome the soft tissue contrast limitations of the current standard of care kV-image guided radiotherapy in some challenging treat-ment sites. By directly visualising soft tissue targets and organs at risk, removing the dependence on surrogates for image guidance, it is expected there will be a decrease in the geometric uncertainties related to daily patient setup. This new approach to image guided radiotherapy presents unique challenges due to the permanent mag-netic field of the integrated MRI unit. The trajectory of charged particles including dose depositing secondary electrons are perturbed by the magnetic field, adding to the challenge of calculating the patient dosimetry and validating the calculation with measurement as is standard practice in radiotherapy. The magnetic field may also effect the operation and response of radiation detectors and a method of accurately characterising the influence of the magnetic field on detector response and operation is required. This thesis reports progress made towards real time high spatial resolution dosime-try of photon and proton MRI guided radiotherapy beams using novel monolithic silicon detectors designed at the Centre for Medical Radiation Physics (CMRP). One challenge in experimentally characterising the magnetic field effects on a radiation detectors operation is how to perform dosimetry measurements with and without a magnetic field of varying strength and orientation from a single radiation source as this is not feasible on existing MRI linacs with a permanent magnetic field of fixed strength. A bespoke semi-portable magnet device was developed to meet this need. The device employs an adjustable iron yoke and focusing cones to vary the magnetic field of the central volume, a 0.3 T field can be achieved for volume to 10 x 10 x 10 cm3 and up to a 1.2 T for a volume of at least 3 x 3 x 3 cm3. The device is de-signed to be used with a clinical linear accelerator in both inline and perpendicular magnetic field orientations to meet the challenge of detector characterisation. The performance of the magnetic field generated by the device was within ±2 % of finite element modelling predictions of all configurations tested

Designing energy-efficient computing systems using equalization and machine learning

As technology scaling slows down in the nanometer CMOS regime and mobile computing becomes more ubiquitous, designing energy-efficient hardware for mobile systems is becoming increasingly critical and challenging. Although various approaches like near-threshold computing (NTC), aggressive voltage scaling with shadow latches, etc. have been proposed to get the most out of limited battery life, there is still no “silver bullet” to increasing power-performance demands of the mobile systems. Moreover, given that a mobile system could operate in a variety of environmental conditions, like different temperatures, have varying performance requirements, etc., there is a growing need for designing tunable/reconfigurable systems in order to achieve energy-efficient operation. In this work we propose to address the energy- efficiency problem of mobile systems using two different approaches: circuit tunability and distributed adaptive algorithms. Inspired by the communication systems, we developed feedback equalization based digital logic that changes the threshold of its gates based on the input pattern. We showed that feedback equalization in static complementary CMOS logic enabled up to 20% reduction in energy dissipation while maintaining the performance metrics. We also achieved 30% reduction in energy dissipation for pass-transistor digital logic (PTL) with equalization while maintaining performance. In addition, we proposed a mechanism that leverages feedback equalization techniques to achieve near optimal operation of static complementary CMOS logic blocks over the entire voltage range from near threshold supply voltage to nominal supply voltage. Using energy-delay product (EDP) as a metric we analyzed the use of the feedback equalizer as part of various sequential computational blocks. Our analysis shows that for near-threshold voltage operation, when equalization was used, we can improve the operating frequency by up to 30%, while the energy increase was less than 15%, with an overall EDP reduction of ≈10%. We also observe an EDP reduction of close to 5% across entire above-threshold voltage range. On the distributed adaptive algorithm front, we explored energy-efficient hardware implementation of machine learning algorithms. We proposed an adaptive classifier that leverages the wide variability in data complexity to enable energy-efficient data classification operations for mobile systems. Our approach takes advantage of varying classification hardness across data to dynamically allocate resources and improve energy efficiency. On average, our adaptive classifier is ≈100× more energy efficient but has ≈1% higher error rate than a complex radial basis function classifier and is ≈10× less energy efficient but has ≈40% lower error rate than a simple linear classifier across a wide range of classification data sets. We also developed a field of groves (FoG) implementation of random forests (RF) that achieves an accuracy comparable to Convolutional Neural Networks (CNN) and Support Vector Machines (SVM) under tight energy budgets. The FoG architecture takes advantage of the fact that in random forests a small portion of the weak classifiers (decision trees) might be sufficient to achieve high statistical performance. By dividing the random forest into smaller forests (Groves), and conditionally executing the rest of the forest, FoG is able to achieve much higher energy efficiency levels for comparable error rates. We also take advantage of the distributed nature of the FoG to achieve high level of parallelism. Our evaluation shows that at maximum achievable accuracies FoG consumes ≈1.48×, ≈24×, ≈2.5×, and ≈34.7× lower energy per classification compared to conventional RF, SVM-RBF , Multi-Layer Perceptron Network (MLP), and CNN, respectively. FoG is 6.5× less energy efficient than SVM-LR, but achieves 18% higher accuracy on average across all considered datasets

Parallel computing 2011, ParCo 2011: book of abstracts

This book contains the abstracts of the presentations at the conference Parallel Computing 2011, 30 August - 2 September 2011, Ghent, Belgiu