Disentangling causal webs in the brain using functional Magnetic Resonance Imaging: A review of current approaches

In the past two decades, functional Magnetic Resonance Imaging has been used to relate neuronal network activity to cognitive processing and behaviour. Recently this approach has been augmented by algorithms that allow us to infer causal links between component populations of neuronal networks. Multiple inference procedures have been proposed to approach this research question but so far, each method has limitations when it comes to establishing whole-brain connectivity patterns. In this work, we discuss eight ways to infer causality in fMRI research: Bayesian Nets, Dynamical Causal Modelling, Granger Causality, Likelihood Ratios, LiNGAM, Patel's Tau, Structural Equation Modelling, and Transfer Entropy. We finish with formulating some recommendations for the future directions in this area

Lagged and instantaneous dynamical influences related to brain structural connectivity

Contemporary neuroimaging methods can shed light on the basis of human neural and cognitive specializations, with important implications for neuroscience and medicine. Different MRI acquisitions provide different brain networks at the macroscale; whilst diffusion-weighted MRI (dMRI) provides a structural connectivity (SC) coincident with the bundles of parallel fibers between brain areas, functional MRI (fMRI) accounts for the variations in the blood-oxygenation-level-dependent T2* signal, providing functional connectivity (FC).Understanding the precise relation between FC and SC, that is, between brain dynamics and structure, is still a challenge for neuroscience. To investigate this problem, we acquired data at rest and built the corresponding SC (with matrix elements corresponding to the fiber number between brain areas) to be compared with FC connectivity matrices obtained by 3 different methods: directed dependencies by an exploratory version of structural equation modeling (eSEM), linear correlations (C) and partial correlations (PC). We also considered the possibility of using lagged correlations in time series; so, we compared a lagged version of eSEM and Granger causality (GC). Our results were two-fold: firstly, eSEM performance in correlating with SC was comparable to those obtained from C and PC, but eSEM (not C nor PC) provides information about directionality of the functional interactions. Second, interactions on a time scale much smaller than the sampling time, captured by instantaneous connectivity methods, are much more related to SC than slow directed influences captured by the lagged analysis. Indeed the performance in correlating with SC was much worse for GC and for the lagged version of eSEM. We expect these results to supply further insights to the interplay between SC and functional patterns, an important issue in the study of brain physiology and function.Comment: Accepted and published in Frontiers in Psychology in its current form. 27 pages, 1 table, 5 figures, 2 suppl. figure

The EnTrak system : supporting energy action planning via the Internet

Recent energy policy is designed to foster better energy efficiency and assist with the deployment of clean energy systems, especially those derived from renewable energy sources. To attain the envisaged targets will require action at all levels and effective collaboration between disparate groups (e.g. policy makers, developers, local authorities, energy managers, building designers, consumers etc) impacting on energy and environment. To support such actions and collaborations, an Internet-enabled energy information system called 'EnTrak' was developed. The aim was to provide decision-makers with information on energy demands, supplies and impacts by sector, time, fuel type and so on, in support of energy action plan formulation and enactment. This paper describes the system structure and capabilities of the EnTrak system

Modelling urban floods using a finite element staggered scheme with porosity and anisotropic resistance

Artificial porosity models for urban flooding use porosity as a statistical descriptor for the presence of buildings, which are then treated as subgridscale features. Computational efficiency makes porosity models attractive for large-scale applications. These models are typically implemented in the framework of two-dimensional (2D) finite volume collocated schemes. The most effective schemes, falling under the category of Integral Porosity models, allow accounting for a wealth of sub-grid processes, but they are known to suffer from oversensitivity to mesh design in the case of anisotropic porosity fields. In the present exploratory study, a dual porosity approach is implemented into a staggered finite element numerical model. The free surface elevation is defined at grid nodes, where continuity equation is solved; fluxes are conveyed by triangular cells, which act as 2D-links between adjacent grid nodes. The presence of building is modelled using an isotropic porosity in the continuity equation to account for the reduced water storage, and an anisotropic conveyance porosity in the momentum equations to compute bottom shear stress. Both porosities are defined on an element-by-element basis, thus avoiding mesh-dependency. Although suffering a number of limitations, the model shows promising results

The Benefits to People of Expanding Marine Protected Areas

This study focuses on how the economic value of marine ecosystem services to people and communities is expected to change with the expansion of marine protected areas (MPAs). It is recognised, however, that instrumental economic value derived from ecosystem services is only one component of the overall value of the marine environment and that the intrinsic value of nature also provides an argument for the conservation of the marine habitats and biodiversity

Neural Circuitry of Novelty Salience Processing in Psychosis Risk: Association With Clinical Outcome

Psychosis has been proposed to develop from dysfunction in a hippocampal-striatal-midbrain circuit, leading to aberrant salience processing. Here, we used functional magnetic resonance imaging (fMRI) during novelty salience processing to investigate this model in people at clinical high risk (CHR) for psychosis according to their subsequent clinical outcomes. Seventy-six CHR participants as defined using the Comprehensive Assessment of At-Risk Mental States (CAARMS) and 31 healthy controls (HC) were studied while performing a novelty salience fMRI task that engaged an a priori hippocampal-striatal-midbrain circuit of interest. The CHR sample was then followed clinically for a mean of 59.7 months (~5 y), when clinical outcomes were assessed in terms of transition (CHR-T) or non-transition (CHR-NT) to psychosis (CAARMS criteria): during this period, 13 individuals (17%) developed a psychotic disorder (CHR-T) and 63 did not. Functional activation and effective connectivity within a hippocampal-striatal-midbrain circuit were compared between groups. In CHR individuals compared to HC, hippocampal response to novel stimuli was significantly attenuated (P = .041 family-wise error corrected). Dynamic Causal Modelling revealed that stimulus novelty modulated effective connectivity from the hippocampus to the striatum, and from the midbrain to the hippocampus, significantly more in CHR participants than in HC. Conversely, stimulus novelty modulated connectivity from the midbrain to the striatum significantly less in CHR participants than in HC, and less in CHR participants who subsequently developed psychosis than in CHR individuals who did not become psychotic. Our findings are consistent with preclinical evidence implicating hippocampal-striatal-midbrain circuit dysfunction in altered salience processing and the onset of psychosis