Representation Learning for Scale-free Networks

Network embedding aims to learn the low-dimensional representations of vertexes in a network, while structure and inherent properties of the network is preserved. Existing network embedding works primarily focus on preserving the microscopic structure, such as the first- and second-order proximity of vertexes, while the macroscopic scale-free property is largely ignored. Scale-free property depicts the fact that vertex degrees follow a heavy-tailed distribution (i.e., only a few vertexes have high degrees) and is a critical property of real-world networks, such as social networks. In this paper, we study the problem of learning representations for scale-free networks. We first theoretically analyze the difficulty of embedding and reconstructing a scale-free network in the Euclidean space, by converting our problem to the sphere packing problem. Then, we propose the "degree penalty" principle for designing scale-free property preserving network embedding algorithm: punishing the proximity between high-degree vertexes. We introduce two implementations of our principle by utilizing the spectral techniques and a skip-gram model respectively. Extensive experiments on six datasets show that our algorithms are able to not only reconstruct heavy-tailed distributed degree distribution, but also outperform state-of-the-art embedding models in various network mining tasks, such as vertex classification and link prediction.Comment: 8 figures; accepted by AAAI 201

Learning Edge Representations via Low-Rank Asymmetric Projections

We propose a new method for embedding graphs while preserving directed edge information. Learning such continuous-space vector representations (or embeddings) of nodes in a graph is an important first step for using network information (from social networks, user-item graphs, knowledge bases, etc.) in many machine learning tasks. Unlike previous work, we (1) explicitly model an edge as a function of node embeddings, and we (2) propose a novel objective, the "graph likelihood", which contrasts information from sampled random walks with non-existent edges. Individually, both of these contributions improve the learned representations, especially when there are memory constraints on the total size of the embeddings. When combined, our contributions enable us to significantly improve the state-of-the-art by learning more concise representations that better preserve the graph structure. We evaluate our method on a variety of link-prediction task including social networks, collaboration networks, and protein interactions, showing that our proposed method learn representations with error reductions of up to 76% and 55%, on directed and undirected graphs. In addition, we show that the representations learned by our method are quite space efficient, producing embeddings which have higher structure-preserving accuracy but are 10 times smaller

edge2vec: Representation learning using edge semantics for biomedical knowledge discovery

Representation learning provides new and powerful graph analytical approaches and tools for the highly valued data science challenge of mining knowledge graphs. Since previous graph analytical methods have mostly focused on homogeneous graphs, an important current challenge is extending this methodology for richly heterogeneous graphs and knowledge domains. The biomedical sciences are such a domain, reflecting the complexity of biology, with entities such as genes, proteins, drugs, diseases, and phenotypes, and relationships such as gene co-expression, biochemical regulation, and biomolecular inhibition or activation. Therefore, the semantics of edges and nodes are critical for representation learning and knowledge discovery in real world biomedical problems. In this paper, we propose the edge2vec model, which represents graphs considering edge semantics. An edge-type transition matrix is trained by an Expectation-Maximization approach, and a stochastic gradient descent model is employed to learn node embedding on a heterogeneous graph via the trained transition matrix. edge2vec is validated on three biomedical domain tasks: biomedical entity classification, compound-gene bioactivity prediction, and biomedical information retrieval. Results show that by considering edge-types into node embedding learning in heterogeneous graphs, \textbf{edge2vec}\ significantly outperforms state-of-the-art models on all three tasks. We propose this method for its added value relative to existing graph analytical methodology, and in the real world context of biomedical knowledge discovery applicability.Comment: 10 page

Knowledge is at the Edge! How to Search in Distributed Machine Learning Models

With the advent of the Internet of Things and Industry 4.0 an enormous amount of data is produced at the edge of the network. Due to a lack of computing power, this data is currently send to the cloud where centralized machine learning models are trained to derive higher level knowledge. With the recent development of specialized machine learning hardware for mobile devices, a new era of distributed learning is about to begin that raises a new research question: How can we search in distributed machine learning models? Machine learning at the edge of the network has many benefits, such as low-latency inference and increased privacy. Such distributed machine learning models can also learn personalized for a human user, a specific context, or application scenario. As training data stays on the devices, control over possibly sensitive data is preserved as it is not shared with a third party. This new form of distributed learning leads to the partitioning of knowledge between many devices which makes access difficult. In this paper we tackle the problem of finding specific knowledge by forwarding a search request (query) to a device that can answer it best. To that end, we use a entropy based quality metric that takes the context of a query and the learning quality of a device into account. We show that our forwarding strategy can achieve over 95% accuracy in a urban mobility scenario where we use data from 30 000 people commuting in the city of Trento, Italy.Comment: Published in CoopIS 201

Distributed Temporal Link Prediction Algorithm Based on Label Propagation

Link prediction has steadily become an important research topic in the area of complex networks. However, the current link prediction algorithms typically neglect the evolution process and they tend to exhibit low accuracy and scalability when applied to large-scale networks. In this article, we propose a novel distributed temporal link prediction algorithm based on label propagation (DTLPLP), governed by the dynamical properties of the interactions between nodes. In particular, nodes are associated with labels, which include details of their sources, and the corresponding similarity value. When such labels are propagated across neighbouring nodes, they are updated based on the weights of the incident links, and the values from same source nodes are aggregated to evaluate the scores of links in the predicted network. Furthermore, DTLPLP has been designed to be distributed and parallelised, and thus suitable for large-scale network analysis. As part of the validation process, we have designed a prototype system developed in Pregel, which is a distributed network analysis framework. Experiments are conducted on the Enron e-mails and the General Relativity and Quantum Cosmology Scientific Collaboration networks. The experimental results show that compared to the most of link prediction algorithms, DTLPLP offers enhanced accuracy, stability and scalability