8,419 research outputs found
Methods of Hierarchical Clustering
We survey agglomerative hierarchical clustering algorithms and discuss
efficient implementations that are available in R and other software
environments. We look at hierarchical self-organizing maps, and mixture models.
We review grid-based clustering, focusing on hierarchical density-based
approaches. Finally we describe a recently developed very efficient (linear
time) hierarchical clustering algorithm, which can also be viewed as a
hierarchical grid-based algorithm.Comment: 21 pages, 2 figures, 1 table, 69 reference
Flexible constrained sampling with guarantees for pattern mining
Pattern sampling has been proposed as a potential solution to the infamous
pattern explosion. Instead of enumerating all patterns that satisfy the
constraints, individual patterns are sampled proportional to a given quality
measure. Several sampling algorithms have been proposed, but each of them has
its limitations when it comes to 1) flexibility in terms of quality measures
and constraints that can be used, and/or 2) guarantees with respect to sampling
accuracy. We therefore present Flexics, the first flexible pattern sampler that
supports a broad class of quality measures and constraints, while providing
strong guarantees regarding sampling accuracy. To achieve this, we leverage the
perspective on pattern mining as a constraint satisfaction problem and build
upon the latest advances in sampling solutions in SAT as well as existing
pattern mining algorithms. Furthermore, the proposed algorithm is applicable to
a variety of pattern languages, which allows us to introduce and tackle the
novel task of sampling sets of patterns. We introduce and empirically evaluate
two variants of Flexics: 1) a generic variant that addresses the well-known
itemset sampling task and the novel pattern set sampling task as well as a wide
range of expressive constraints within these tasks, and 2) a specialized
variant that exploits existing frequent itemset techniques to achieve
substantial speed-ups. Experiments show that Flexics is both accurate and
efficient, making it a useful tool for pattern-based data exploration.Comment: Accepted for publication in Data Mining & Knowledge Discovery journal
(ECML/PKDD 2017 journal track
Dense subgraph mining with a mixed graph model
In this paper we introduce a graph clustering method based on
dense bipartite subgraph mining. The method applies a mixed
graph model (both standard and bipartite) in a three-phase
algorithm. First a seed mining method is applied to find seeds
of clusters, the second phase consists of refining the seeds,
and in the third phase vertices outside the seeds are clustered.
The method is able to detect overlapping clusters, can handle
outliers and applicable without restrictions on the degrees of
vertices or the size of the clusters. The running time of the
method is polynomial. A theoretical result is introduced on
density bounds of bipartite subgraphs with size and local
density conditions. Test results on artificial datasets and
social interaction graphs are also presented
Core Decomposition in Multilayer Networks: Theory, Algorithms, and Applications
Multilayer networks are a powerful paradigm to model complex systems, where
multiple relations occur between the same entities. Despite the keen interest
in a variety of tasks, algorithms, and analyses in this type of network, the
problem of extracting dense subgraphs has remained largely unexplored so far.
In this work we study the problem of core decomposition of a multilayer
network. The multilayer context is much challenging as no total order exists
among multilayer cores; rather, they form a lattice whose size is exponential
in the number of layers. In this setting we devise three algorithms which
differ in the way they visit the core lattice and in their pruning techniques.
We then move a step forward and study the problem of extracting the
inner-most (also known as maximal) cores, i.e., the cores that are not
dominated by any other core in terms of their core index in all the layers.
Inner-most cores are typically orders of magnitude less than all the cores.
Motivated by this, we devise an algorithm that effectively exploits the
maximality property and extracts inner-most cores directly, without first
computing a complete decomposition.
Finally, we showcase the multilayer core-decomposition tool in a variety of
scenarios and problems. We start by considering the problem of densest-subgraph
extraction in multilayer networks. We introduce a definition of multilayer
densest subgraph that trades-off between high density and number of layers in
which the high density holds, and exploit multilayer core decomposition to
approximate this problem with quality guarantees. As further applications, we
show how to utilize multilayer core decomposition to speed-up the extraction of
frequent cross-graph quasi-cliques and to generalize the community-search
problem to the multilayer setting
Nonnegative factorization and the maximum edge biclique problem
Nonnegative matrix factorization (NMF) is a data analysis technique based on the approximation of a nonnegative matrix with a product of two nonnegative factors, which allows compression and interpretation of nonnegative data. In this paper, we study the case of rank-one factorization and show that when the matrix to be factored is not required to be nonnegative, the corresponding problem (R1NF) becomes NP-hard. This sheds new light on the complexity of NMF since any algorithm for fixed-rank NMF must be able to solve at least implicitly such rank-one subproblems. Our proof relies on a reduction of the maximum edge biclique problem to R1NF. We also link stationary points of R1NF to feasible solutions of the biclique problem, which allows us to design a new type of biclique finding algorithm based on the application of a block-coordinate descent scheme to R1NF. We show that this algorithm, whose algorithmic complexity per iteration is proportional to the number of edges in the graph, is guaranteed to converge to a biclique and that it performs competitively with existing methods on random graphs and text mining datasets.nonnegative matrix factorization, rank-one factorization, maximum edge biclique problem, algorithmic complexity, biclique finding algorithm
MARGIN: Uncovering Deep Neural Networks using Graph Signal Analysis
Interpretability has emerged as a crucial aspect of machine learning, aimed
at providing insights into the working of complex neural networks. However,
existing solutions vary vastly based on the nature of the interpretability
task, with each use case requiring substantial time and effort. This paper
introduces MARGIN, a simple yet general approach to address a large set of
interpretability tasks ranging from identifying prototypes to explaining image
predictions. MARGIN exploits ideas rooted in graph signal analysis to determine
influential nodes in a graph, which are defined as those nodes that maximally
describe a function defined on the graph. By carefully defining task-specific
graphs and functions, we demonstrate that MARGIN outperforms existing
approaches in a number of disparate interpretability challenges.Comment: Technical Repor
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