NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation

Biomedical researchers use ontologies to annotate their data with ontology terms, enabling better data integration and interoperability. However, the number, variety and complexity of current biomedical ontologies make it cumbersome for researchers to determine which ones to reuse for their specific needs. To overcome this problem, in 2010 the National Center for Biomedical Ontology (NCBO) released the Ontology Recommender, which is a service that receives a biomedical text corpus or a list of keywords and suggests ontologies appropriate for referencing the indicated terms. We developed a new version of the NCBO Ontology Recommender. Called Ontology Recommender 2.0, it uses a new recommendation approach that evaluates the relevance of an ontology to biomedical text data according to four criteria: (1) the extent to which the ontology covers the input data; (2) the acceptance of the ontology in the biomedical community; (3) the level of detail of the ontology classes that cover the input data; and (4) the specialization of the ontology to the domain of the input data. Our evaluation shows that the enhanced recommender provides higher quality suggestions than the original approach, providing better coverage of the input data, more detailed information about their concepts, increased specialization for the domain of the input data, and greater acceptance and use in the community. In addition, it provides users with more explanatory information, along with suggestions of not only individual ontologies but also groups of ontologies. It also can be customized to fit the needs of different scenarios. Ontology Recommender 2.0 combines the strengths of its predecessor with a range of adjustments and new features that improve its reliability and usefulness. Ontology Recommender 2.0 recommends over 500 biomedical ontologies from the NCBO BioPortal platform, where it is openly available.Comment: 29 pages, 8 figures, 11 table

An Algorithm for Automatic Service Composition

Telecommunication companies are struggling to provide their users with value-added services. These services are expected to be context-aware, attentive and personalized. Since it is not economically feasible to build services separately by hand for each individual user, service providers are searching for alternatives to automate service creation. The IST-SPICE project aims at developing a platform for the development and deployment of innovative value-added services. In this paper we introduce our algorithm to cope with the task of automatic composition of services. The algorithm considers that every available service is semantically annotated. Based on a user/developer service request a matching service is composed in terms of component services. The composition follows a semantic graph-based approach, on which atomic services are iteratively composed based on services' functional and non-functional properties

A Pattern Based Approach for Re-engineering Non-Ontological Resources into Ontologies

With the goal of speeding up the ontology development process, ontology engineers are starting to reuse as much as possible available ontologies and non-ontological resources such as classification schemes, thesauri, lexicons and folksonomies, that already have some degree of consensus. The reuse of such non-ontological resources necessarily involves their re-engineering into ontologies. Non-ontological resources are highly heterogeneous in their data model and contents: they encode different types of knowledge, and they can be modeled and implemented in different ways. In this paper we present (1) a typology for non-ontological resources, (2) a pattern based approach for re-engineering non-ontological resources into ontologies, and (3) a use case of the proposed approach

Towards the next generation of smart grids: semantic and holonic multi-agent management of distributed energy resources

The energy landscape is experiencing accelerating change; centralized energy systems are being decarbonized, and transitioning towards distributed energy systems, facilitated by advances in power system management and information and communication technologies. This paper elaborates on these generations of energy systems by critically reviewing relevant authoritative literature. This includes a discussion of modern concepts such as ‘smart grid’, ‘microgrid’, ‘virtual power plant’ and ‘multi-energy system’, and the relationships between them, as well as the trends towards distributed intelligence and interoperability. Each of these emerging urban energy concepts holds merit when applied within a centralized grid paradigm, but very little research applies these approaches within the emerging energy landscape typified by a high penetration of distributed energy resources, prosumers (consumers and producers), interoperability, and big data. Given the ongoing boom in these fields, this will lead to new challenges and opportunities as the status-quo of energy systems changes dramatically. We argue that a new generation of holonic energy systems is required to orchestrate the interplay between these dense, diverse and distributed energy components. The paper therefore contributes a description of holonic energy systems and the implicit research required towards sustainability and resilience in the imminent energy landscape. This promotes the systemic features of autonomy, belonging, connectivity, diversity and emergence, and balances global and local system objectives, through adaptive control topologies and demand responsive energy management. Future research avenues are identified to support this transition regarding interoperability, secure distributed control and a system of systems approach

Systematic Literature Review on Ontology-based Indonesian Question Answering System

Question-Answering (QA) systems at the intersection of natural language processing, information retrieval, and knowledge representation aim to provide efficient responses to natural language queries. These systems have seen extensive development in English and languages like Indonesian present unique challenges and opportunities. This literature review paper delves into the state of ontology-based Indonesian QA systems, highlighting critical challenges. The first challenge lies in sentence understanding, variations, and complexity. Most systems rely on syntactic analysis and struggle to grasp sentence semantics. Complex sentences, especially in Indonesian, pose difficulties in parsing, semantic interpretation, and knowledge extraction. Addressing these linguistic intricacies is pivotal for accurate responses. Secondly, template-based SPARQL query construction, commonly used in Indonesian QA systems, suffers from semantic gaps and inflexibility. Advanced techniques like semantic matching algorithms and dynamic template generation can bridge these gaps and adapt to evolving ontologies. Thirdly, lexical gaps and ambiguity hinder QA systems. Bridging vocabulary mismatches between user queries and ontology labels remains a challenge. Strategies like synonym expansion, word embedding, and ontology enrichment must be explored further to overcome these challenges. Lastly, the review discusses the potential of developing multi-domain ontologies to broaden the knowledge coverage of QA systems. While this presents complex linguistic and ontological challenges, it offers the advantage of responding to various user queries across various domains. This literature review identifies crucial challenges in developing ontology-based Indonesian QA systems and suggests innovative approaches to address these challenges

The use of domain ontologies for improving the adaptability and collaborative ability of a web dialogue system

Dialogue systems can be used for guiding the users accessing web services, enhancing the web usability. However, they are expensive to develop and difficult to adapt to different types of web services. The knowledge model of a web service can be seen as the basis to define the semantics of the information to be exchanged among the components of a dialogue system. This approach facilitates the integration of the different types of knowledge involved in human-machine communication and provides a unified framework easier to apply to new web services. Furthermore, the representation of the web service knowledge according to an ontology can enhance the reasoning capabilities of the underlying system. This article describes the use of domain ontologies in a mixed-initiative web dialogue system for improving both its adaptability and its collaborative ability.Peer ReviewedPostprint (published version

Ontology-based assistance system for control process reconfiguration of Robot-Based Applications

Due to increasing global competition, companies are challenged to make their production flexible and adaptable. This leads to a steadily increasing complexity of production systems and thus their automation and control processes. At the same time, control processes must be quickly configurable in order to be able to react to short product life cycles. Robot-based adhesive application in automotive body assembly represents one such control and automation process. In car body assembly, industrial robots are increasingly being used for gluing side panels, enabling flow operation in assembly. In the event of a functional change in the production process, such as the replacement of the adhesive to be used, all the given process interrelationships must be analysed again and reconfigured if necessary in order to ensure the quality of the bonded joint. Comprehensive data management systems that provide an overview of all the system parameters and control levers are often not available in companies, so that reconfiguration is based on experience. Correct adjustment of the process parameters thus requires the user to have precise knowledge of the complex interrelationships between the process and bonding parameters, which makes the search for solutions in the event of a process change more difficult and time-consuming. In order to master the complexity of process planning and configuration, a large number of user-supporting solutions exist in the area of product lifecycle management (PLM). However, these neither have the functionality to generate solution and optimization proposals, nor do they map the existing expert knowledge with so-called empirical values about the system behaviour. The advantages of semantic technologies including ontologies, such as their graph structure and suitability for the use of optimization algorithms, illustrate their potential as the basis of a knowledge-based assistance solution. Against this background, the aim of this paper is to develop an ontology-based knowledge management system that can consolidate existing product and process information and add expert knowledge to it. The resulting knowledge graph of the process is then examined using selected optimization algorithms (PMS, Parallel Machine Scheduling). From the analysis, configuration suggestions can be derived, which can be presented to the user with a visualisation interface. Finally, the potential of ontologies as the basis of a knowledge-based assistance system is evaluated based on given results

Implementing sharing platform based on ontology using a sequential recommender system

While recommender systems have shown success in many fields, accurate recommendations in industrial settings remain challenging. In maintenance, existing techniques often struggle with the “cold start” problem and fail to consider differences in the target population's characteristics. To address this, additional user information can be incorporated into the recommendation process. This paper proposes a recommender system for recommending repair actions to technicians based on an ontology (knowledge base) and a sequential model. The approach utilizes two ontologies, one representing failure knowledge and the other representing asset attributes. The proposed method involves two steps: i) calculating score similarity based on ontology domain knowledge to make predictions for targeted failures and ii) generating Top-N repair actions through collaborative filtering recommendations for targeted failures. An additional module was implemented to evaluate the recommender system, and results showed improved performance