An Abstract Module Concept for Graph Transformation Systems

Graph transformation systems are a well known formal specification technique that support the rule based specification of the dynamic behaviour of systems. Recently, many specification languages for graph transformation systems have been developed, and modularization techniques are then needed in order to deal with large and complex graph transformation specifications, to enhance the reuse of specifications, and to hide implementation details. In this paper we present an abstract categorical approach to modularization of graph transformation systems. Modules are called cat–modules and defined over a generic category cat of graph transformation specifications and morphisms. We describe the main characteristics and properties of cat–modules, their interconnection operations, namely union, composition and refinement of modules, and some compatibility properties between such operations

A graph-semantics of business configurations

In this paper we give graph-semantics to a fundamental part of the semantics of the service modeling language SRML. To achieve this goal we develop a new graph transformation system for what we call 2-level symbolic graphs. These kind of graphs extend symbolic graphs with a simple 2-level hierarchy that can be generalized to arbitrary hierarchies. We formalize the semantics using this new graph transformation system using a simple example of a trip booking agent.Postprint (published version

Making Digital Artifacts on the Web Verifiable and Reliable

The current Web has no general mechanisms to make digital artifacts --- such as datasets, code, texts, and images --- verifiable and permanent. For digital artifacts that are supposed to be immutable, there is moreover no commonly accepted method to enforce this immutability. These shortcomings have a serious negative impact on the ability to reproduce the results of processes that rely on Web resources, which in turn heavily impacts areas such as science where reproducibility is important. To solve this problem, we propose trusty URIs containing cryptographic hash values. We show how trusty URIs can be used for the verification of digital artifacts, in a manner that is independent of the serialization format in the case of structured data files such as nanopublications. We demonstrate how the contents of these files become immutable, including dependencies to external digital artifacts and thereby extending the range of verifiability to the entire reference tree. Our approach sticks to the core principles of the Web, namely openness and decentralized architecture, and is fully compatible with existing standards and protocols. Evaluation of our reference implementations shows that these design goals are indeed accomplished by our approach, and that it remains practical even for very large files.Comment: Extended version of conference paper: arXiv:1401.577

A formal support to business and architectural design for service-oriented systems

Architectural Design Rewriting (ADR) is an approach for the design of software architectures developed within Sensoria by reconciling graph transformation and process calculi techniques. The key feature that makes ADR a suitable and expressive framework is the algebraic handling of structured graphs, which improves the support for specification, analysis and verification of service-oriented architectures and applications. We show how ADR is used as a formal ground for high-level modelling languages and approaches developed within Sensoria

Qualitative modelling and analysis of regulations in multi-cellular systems using Petri nets and topological collections

In this paper, we aim at modelling and analyzing the regulation processes in multi-cellular biological systems, in particular tissues. The modelling framework is based on interconnected logical regulatory networks a la Rene Thomas equipped with information about their spatial relationships. The semantics of such models is expressed through colored Petri nets to implement regulation rules, combined with topological collections to implement the spatial information. Some constraints are put on the the representation of spatial information in order to preserve the possibility of an enumerative and exhaustive state space exploration. This paper presents the modelling framework, its semantics, as well as a prototype implementation that allowed preliminary experimentation on some applications.Comment: In Proceedings MeCBIC 2010, arXiv:1011.005

Distributed graph-based state space generation

LTSMIN provides a framework in which state space generation can be distributed easily over many cores on a single compute node, as well as over multiple compute nodes. The tool works on the basis of a vector representation of the states; the individual cores are assigned the task of computing all successors of states that are sent to them. In this paper we show how this framework can be applied in the case where states are essentially graphs interpreted up to isomorphism, such as the ones we have been studying for GROOVE. This involves developing a suitable vector representation for a canonical form of those graphs. The canonical forms are computed using a third tool called BLISS. We combined the three tools to form a system for distributed state space generation based on graph grammars. We show that the time performance of the resulting system scales well (i.e., close to linear) with the number of cores. We also report surprising statistics on the memory\ud consumption, which imply that the vector representation used to store graphs in LTSMIN is more compact than the representation used in GROOVE