653 research outputs found
X-ray CT Image Reconstruction on Highly-Parallel Architectures.
Model-based image reconstruction (MBIR) methods for X-ray CT use accurate
models of the CT acquisition process, the statistics of the noisy measurements,
and noise-reducing regularization to produce potentially higher quality images
than conventional methods even at reduced X-ray doses. They do this by
minimizing a statistically motivated high-dimensional cost function; the high
computational cost of numerically minimizing this function has prevented MBIR
methods from reaching ubiquity in the clinic. Modern highly-parallel hardware
like graphics processing units (GPUs) may offer the computational resources to
solve these reconstruction problems quickly, but simply "translating" existing
algorithms designed for conventional processors to the GPU may not fully
exploit the hardware's capabilities.
This thesis proposes GPU-specialized image denoising and image reconstruction
algorithms. The proposed image denoising algorithm uses group coordinate
descent with carefully structured groups. The algorithm converges very
rapidly: in one experiment, it denoises a 65 megapixel image in about 1.5
seconds, while the popular Chambolle-Pock primal-dual algorithm running on the
same hardware takes over a minute to reach the same level of accuracy.
For X-ray CT reconstruction, this thesis uses duality and group coordinate
ascent to propose an alternative to the popular ordered subsets (OS) method.
Similar to OS, the proposed method can use a subset of the data to update the
image. Unlike OS, the proposed method is convergent. In one helical CT
reconstruction experiment, an implementation of the proposed algorithm using
one GPU converges more quickly than a state-of-the-art algorithm converges
using four GPUs. Using four GPUs, the proposed algorithm reaches near
convergence of a wide-cone axial reconstruction problem with over 220 million
voxels in only 11 minutes.PhDElectrical Engineering: SystemsUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/113551/1/mcgaffin_1.pd
Multi-GPU Acceleration of Iterative X-ray CT Image Reconstruction
X-ray computed tomography is a widely used medical imaging modality for screening and diagnosing diseases and for image-guided radiation therapy treatment planning. Statistical iterative reconstruction (SIR) algorithms have the potential to significantly reduce image artifacts by minimizing a cost function that models the physics and statistics of the data acquisition process in X-ray CT. SIR algorithms have superior performance compared to traditional analytical reconstructions for a wide range of applications including nonstandard geometries arising from irregular sampling, limited angular range, missing data, and low-dose CT. The main hurdle for the widespread adoption of SIR algorithms in multislice X-ray CT reconstruction problems is their slow convergence rate and associated computational time.
We seek to design and develop fast parallel SIR algorithms for clinical X-ray CT scanners. Each of the following approaches is implemented on real clinical helical CT data acquired from a Siemens Sensation 16 scanner and compared to the straightforward implementation of the Alternating Minimization (AM) algorithm of O’Sullivan and Benac [1]. We parallelize the computationally expensive projection and backprojection operations by exploiting the massively parallel hardware architecture of 3 NVIDIA TITAN X Graphical Processing Unit (GPU) devices with CUDA programming tools and achieve an average speedup of 72X over a straightforward CPU implementation. We implement a multi-GPU based voxel-driven multislice analytical reconstruction algorithm called Feldkamp-Davis-Kress (FDK) [2] and achieve an average overall speedup of 1382X over the baseline CPU implementation by using 3 TITAN X GPUs. Moreover, we propose a novel adaptive surrogate-function based optimization scheme for the AM algorithm, resulting in more aggressive update steps in every iteration. On average, we double the convergence rate of our baseline AM algorithm and also improve image quality by using the adaptive surrogate function. We extend the multi-GPU and adaptive surrogate-function based acceleration techniques to dual-energy reconstruction problems as well. Furthermore, we design and develop a GPU-based deep Convolutional Neural Network (CNN) to denoise simulated low-dose X-ray CT images. Our experiments show significant improvements in the image quality with our proposed deep CNN-based algorithm against some widely used denoising techniques including Block Matching 3-D (BM3D) and Weighted Nuclear Norm Minimization (WNNM). Overall, we have developed novel fast, parallel, computationally efficient methods to perform multislice statistical reconstruction and image-based denoising on clinically-sized datasets
Distributed optimization for nonrigid nano-tomography
Resolution level and reconstruction quality in nano-computed tomography
(nano-CT) are in part limited by the stability of microscopes, because the
magnitude of mechanical vibrations during scanning becomes comparable to the
imaging resolution, and the ability of the samples to resist beam damage during
data acquisition. In such cases, there is no incentive in recovering the sample
state at different time steps like in time-resolved reconstruction methods, but
instead the goal is to retrieve a single reconstruction at the highest possible
spatial resolution and without any imaging artifacts. Here we propose a joint
solver for imaging samples at the nanoscale with projection alignment,
unwarping and regularization. Projection data consistency is regulated by dense
optical flow estimated by Farneback's algorithm, leading to sharp sample
reconstructions with less artifacts. Synthetic data tests show robustness of
the method to Poisson and low-frequency background noise. Applicability of the
method is demonstrated on two large-scale nano-imaging experimental data sets.Comment: Manuscript and supplementary materia
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