Algorithms for propositional model counting

AbstractWe present algorithms for the propositional model counting problem #SAT. The algorithms utilize tree decompositions of certain graphs associated with the given CNF formula; in particular we consider primal, dual, and incidence graphs. We describe the algorithms coherently for a direct comparison and with sufficient detail for making an actual implementation reasonably easy. We discuss several aspects of the algorithms including worst-case time and space requirements

Model counting for reactive systems

Model counting is the problem of computing the number of solutions for a logical formula. In the last few years, it has been primarily studied for propositional logic, and has been shown to be useful in many applications. In planning, for example, propositional model counting has been used to compute the robustness of a plan in an incomplete domain. In information-flow control, model counting has been applied to measure the amount of information leaked by a security-critical system. In this thesis, we introduce the model counting problem for linear-time properties, and show its applications in formal verification. In the same way propositional model counting generalizes the satisfiability problem for propositional logic, counting models for linear-time properties generalizes the emptiness problem for languages over infinite words to one that asks for the number of words in a language. The model counting problem, thus, provides a foundation for quantitative extensions of model checking, where not only the existence of computations that violate the specification is determined, but also the number of such violations. We solve the model counting problem for the prominent class of omega-regular properties. We present algorithms for solving the problem for different classes of properties, and show the advantages of our algorithms in comparison to indirect approaches based on encodings into propositional logic. We further show how model counting can be used for solving a variety of quantitative problems in formal verification, including probabilistic model checking, quantitative information-flow in security-critical systems, and the synthesis of approximate implementations for reactive systems.Das Modellzählproblem fragt nach der Anzahl der Lösungen einer logischen Formel, und wurde in den letzten Jahren hauptsächlich für Aussagenlogik untersucht. Das Zählen von Modellen aussagenlogischer Formeln hat sich in vielen Anwendungen als nützlich erwiesen. Im Bereich der künstlichen Intelligenz wurde das Zählen von Modellen beispielsweise verwendet, um die Robustheit eines Plans in einem unvollständigen Weltmodell zu bewerten. Das Zählen von Modellen kann auch verwendet werden, um in sicherheitskritischen Systemen die Menge an enthüllten vertraulichen Daten zu messen. Diese Dissertation stellt das Modellzählproblem für Linearzeiteigenschaften vor, und untersucht dessen Rolle in der Welt der formalen Verifikation. Das Zählen von Modellen für Linearzeiteigenschaften führt zu neuen quantitativen Erweiterungen klassischer Verifikationsprobleme, bei denen nicht nur die Existenz eines Fehlers in einem System zu überprüfen ist, sondern auch die Anzahl solcher Fehler. Wir präsentieren Algorithmen zur Lösung des Modellzählproblems für verschiedene Klassen von Linearzeiteigenschaften und zeigen die Vorteile unserer Algorithmen im Vergleich zu indirekten Ansätzen, die auf Kodierungen der untersuchten Probleme in Aussagenlogik basieren. Darüberhinaus zeigen wir wie das Zählen von Modellen zur Lösung einer Vielzahl quantitativer Probleme in der formalen Verifikation verwendet werden kann. Dies beinhaltet unter anderem die Analyse probabilistischer Modelle, die Kontrolle quantitativen Informationsflusses in sicherheitskritischen Systemen, und die Synthese von approximativen Implementierungen für reaktive Systeme

Parallel Model Counting with CUDA: Algorithm Engineering for Efficient Hardware Utilization

Propositional model counting (MC) and its extensions as well as applications in the area of probabilistic reasoning have received renewed attention in recent years. As a result, also the need for quickly solving counting-based problems with automated solvers is critical for certain areas. In this paper, we present experiments evaluating various techniques in order to improve the performance of parallel model counting on general purpose graphics processing units (GPGPUs). Thereby, we mainly consider engineering efficient algorithms for model counting on GPGPUs that utilize the treewidth of a propositional formula by means of dynamic programming. The combination of our techniques results in the solver GPUSAT3, which is based on the programming framework Cuda that -compared to other frameworks- shows superior extensibility and driver support. When combining all findings of this work, we show that GPUSAT3 not only solves more instances of the recent Model Counting Competition 2020 (MCC 2020) than existing GPGPU-based systems, but also solves those significantly faster. A portfolio with one of the best solvers of MCC 2020 and GPUSAT3 solves 19% more instances than the former alone in less than half of the runtime

Model Counting of Query Expressions: Limitations of Propositional Methods

Query evaluation in tuple-independent probabilistic databases is the problem of computing the probability of an answer to a query given independent probabilities of the individual tuples in a database instance. There are two main approaches to this problem: (1) in `grounded inference' one first obtains the lineage for the query and database instance as a Boolean formula, then performs weighted model counting on the lineage (i.e., computes the probability of the lineage given probabilities of its independent Boolean variables); (2) in methods known as `lifted inference' or `extensional query evaluation', one exploits the high-level structure of the query as a first-order formula. Although it is widely believed that lifted inference is strictly more powerful than grounded inference on the lineage alone, no formal separation has previously been shown for query evaluation. In this paper we show such a formal separation for the first time. We exhibit a class of queries for which model counting can be done in polynomial time using extensional query evaluation, whereas the algorithms used in state-of-the-art exact model counters on their lineages provably require exponential time. Our lower bounds on the running times of these exact model counters follow from new exponential size lower bounds on the kinds of d-DNNF representations of the lineages that these model counters (either explicitly or implicitly) produce. Though some of these queries have been studied before, no non-trivial lower bounds on the sizes of these representations for these queries were previously known.Comment: To appear in International Conference on Database Theory (ICDT) 201

First-Order Decomposition Trees

Lifting attempts to speed up probabilistic inference by exploiting symmetries in the model. Exact lifted inference methods, like their propositional counterparts, work by recursively decomposing the model and the problem. In the propositional case, there exist formal structures, such as decomposition trees (dtrees), that represent such a decomposition and allow us to determine the complexity of inference a priori. However, there is currently no equivalent structure nor analogous complexity results for lifted inference. In this paper, we introduce FO-dtrees, which upgrade propositional dtrees to the first-order level. We show how these trees can characterize a lifted inference solution for a probabilistic logical model (in terms of a sequence of lifted operations), and make a theoretical analysis of the complexity of lifted inference in terms of the novel notion of lifted width for the tree

Good Learning and Implicit Model Enumeration

MathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of biochemical reaction networks, applicable to metabolic networks, cell-signaling pathways, genomic regulatory networks, and other modeling problems in systems biology that is widely supported by the systems biology community. SBML is based on XML, a standard medium for representing and transporting data that is widely supported on the internet as well as in computational biology and bioinformatics. Because SBML is tool-independent, it enables model transportability, reuse, publication and survival. In addition to MathSBML, a number of other tools that support SBML model examination and manipulation are provided on the sbml.org website, including libSBML, a C/C++ library for reading SBML models; an SBML Toolbox for MatLab; file conversion programs; an SBML model validator and visualizer; and SBML specifications and schemas. MathSBML enables SBML file import to and export from Mathematica as well as providing an API for model manipulation and simulation