Hardness of Approximation for Morse Matching

Discrete Morse theory has emerged as a powerful tool for a wide range of problems, including the computation of (persistent) homology. In this context, discrete Morse theory is used to reduce the problem of computing a topological invariant of an input simplicial complex to computing the same topological invariant of a (significantly smaller) collapsed cell or chain complex. Consequently, devising methods for obtaining gradient vector fields on complexes to reduce the size of the problem instance has become an emerging theme over the last decade. While computing the optimal gradient vector field on a simplicial complex is NP-hard, several heuristics have been observed to compute near-optimal gradient vector fields on a wide variety of datasets. Understanding the theoretical limits of these strategies is therefore a fundamental problem in computational topology. In this paper, we consider the approximability of maximization and minimization variants of the Morse matching problem, posed as open problems by Joswig and Pfetsch. We establish hardness results for Max-Morse matching and Min-Morse matching. In particular, we show that, for a simplicial complex with n simplices and dimension $d \leq 3$, it is NP-hard to approximate Min-Morse matching within a factor of $O(n^{1-\epsilon})$, for any $\epsilon > 0$. Moreover, using an L-reduction from Degree 3 Max-Acyclic Subgraph to Max-Morse matching, we show that it is both NP-hard and UGC-hard to approximate Max-Morse matching for simplicial complexes of dimension $d \leq 2$ within certain explicit constant factors.Comment: 20 pages, 1 figur

Chunk Reduction for Multi-Parameter Persistent Homology

The extension of persistent homology to multi-parameter setups is an algorithmic challenge. Since most computation tasks scale badly with the size of the input complex, an important pre-processing step consists of simplifying the input while maintaining the homological information. We present an algorithm that drastically reduces the size of an input. Our approach is an extension of the chunk algorithm for persistent homology (Bauer et al., Topological Methods in Data Analysis and Visualization III, 2014). We show that our construction produces the smallest multi-filtered chain complex among all the complexes quasi-isomorphic to the input, improving on the guarantees of previous work in the context of discrete Morse theory. Our algorithm also offers an immediate parallelization scheme in shared memory. Already its sequential version compares favorably with existing simplification schemes, as we show by experimental evaluation

Chunk Reduction for Multi-Parameter Persistent Homology

The extension of persistent homology to multi-parameter setups is an algorithmic challenge. Since most computation tasks scale badly with the size of the input complex, an important pre-processing step consists of simplifying the input while maintaining the homological information. We present an algorithm that drastically reduces the size of an input. Our approach is an extension of the chunk algorithm for persistent homology (Bauer et al., Topological Methods in Data Analysis and Visualization III, 2014). We show that our construction produces the smallest multi-filtered chain complex among all the complexes quasi-isomorphic to the input, improving on the guarantees of previous work in the context of discrete Morse theory. Our algorithm also offers an immediate parallelization scheme in shared memory. Already its sequential version compares favorably with existing simplification schemes, as we show by experimental evaluation

Fast Minimal Presentations of Bi-graded Persistence Modules

Multi-parameter persistent homology is a recent branch of topological data analysis. In this area, data sets are investigated through the lens of homology with respect to two or more scale parameters. The high computational cost of many algorithms calls for a preprocessing step to reduce the input size. In general, a minimal presentation is the smallest possible representation of a persistence module. Lesnick and Wright proposed recently an algorithm (the LW-algorithm) for computing minimal presentations based on matrix reduction. In this work, we propose, implement and benchmark several improvements over the LW-algorithm. Most notably, we propose the use of priority queues to avoid extensive scanning of the matrix columns, which constitutes the computational bottleneck in the LW-algorithm, and we combine their algorithm with ideas from the multi-parameter chunk algorithm by Fugacci and Kerber. Our extensive experiments show that our algorithm outperforms the LW-algorithm and computes the minimal presentation for data sets with millions of simplices within a few seconds. Our software is publicly available.Comment: This is an extended version of a paper that will appear at ALENEX 202

Computational and Theoretical Issues of Multiparameter Persistent Homology for Data Analysis

The basic goal of topological data analysis is to apply topology-based descriptors to understand and describe the shape of data. In this context, homology is one of the most relevant topological descriptors, well-appreciated for its discrete nature, computability and dimension independence. A further development is provided by persistent homology, which allows to track homological features along a oneparameter increasing sequence of spaces. Multiparameter persistent homology, also called multipersistent homology, is an extension of the theory of persistent homology motivated by the need of analyzing data naturally described by several parameters, such as vector-valued functions. Multipersistent homology presents several issues in terms of feasibility of computations over real-sized data and theoretical challenges in the evaluation of possible descriptors. The focus of this thesis is in the interplay between persistent homology theory and discrete Morse Theory. Discrete Morse theory provides methods for reducing the computational cost of homology and persistent homology by considering the discrete Morse complex generated by the discrete Morse gradient in place of the original complex. The work of this thesis addresses the problem of computing multipersistent homology, to make such tool usable in real application domains. This requires both computational optimizations towards the applications to real-world data, and theoretical insights for finding and interpreting suitable descriptors. Our computational contribution consists in proposing a new Morse-inspired and fully discrete preprocessing algorithm. We show the feasibility of our preprocessing over real datasets, and evaluate the impact of the proposed algorithm as a preprocessing for computing multipersistent homology. A theoretical contribution of this thesis consists in proposing a new notion of optimality for such a preprocessing in the multiparameter context. We show that the proposed notion generalizes an already known optimality notion from the one-parameter case. Under this definition, we show that the algorithm we propose as a preprocessing is optimal in low dimensional domains. In the last part of the thesis, we consider preliminary applications of the proposed algorithm in the context of topology-based multivariate visualization by tracking critical features generated by a discrete gradient field compatible with the multiple scalar fields under study. We discuss (dis)similarities of such critical features with the state-of-the-art techniques in topology-based multivariate data visualization

Geometric and Topological Combinatorics

The 2007 Oberwolfach meeting “Geometric and Topological Combinatorics” presented a great variety of investigations where topological and algebraic methods are brought into play to solve combinatorial and geometric problems, but also where geometric and combinatorial ideas are applied to topological questions