Frequent Subgraph Mining in Outerplanar Graphs

In recent years there has been an increased interest in frequent pattern discovery in large databases of graph structured objects. While the frequent connected subgraph mining problem for tree datasets can be solved in incremental polynomial time, it becomes intractable for arbitrary graph databases. Existing approaches have therefore resorted to various heuristic strategies and restrictions of the search space, but have not identified a practically relevant tractable graph class beyond trees. In this paper, we define the class of so called tenuous outerplanar graphs, a strict generalization of trees, develop a frequent subgraph mining algorithm for tenuous outerplanar graphs that works in incremental polynomial time, and evaluate the algorithm empirically on the NCI molecular graph dataset

Approximating the Spectrum of a Graph

The spectrum of a network or graph $G=(V,E)$ with adjacency matrix $A$, consists of the eigenvalues of the normalized Laplacian $L= I - D^{-1/2} A D^{-1/2}$. This set of eigenvalues encapsulates many aspects of the structure of the graph, including the extent to which the graph posses community structures at multiple scales. We study the problem of approximating the spectrum $\lambda = (\lambda_1,\dots,\lambda_{|V|})$, $0 \le \lambda_1,\le \dots, \le \lambda_{|V|}\le 2$ of $G$ in the regime where the graph is too large to explicitly calculate the spectrum. We present a sublinear time algorithm that, given the ability to query a random node in the graph and select a random neighbor of a given node, computes a succinct representation of an approximation $\widetilde \lambda = (\widetilde \lambda_1,\dots,\widetilde \lambda_{|V|})$, $0 \le \widetilde \lambda_1,\le \dots, \le \widetilde \lambda_{|V|}\le 2$ such that $\|\widetilde \lambda - \lambda\|_1 \le \epsilon |V|$. Our algorithm has query complexity and running time $exp(O(1/\epsilon))$, independent of the size of the graph, $|V|$. We demonstrate the practical viability of our algorithm on 15 different real-world graphs from the Stanford Large Network Dataset Collection, including social networks, academic collaboration graphs, and road networks. For the smallest of these graphs, we are able to validate the accuracy of our algorithm by explicitly calculating the true spectrum; for the larger graphs, such a calculation is computationally prohibitive. In addition we study the implications of our algorithm to property testing in the bounded degree graph model

Filtering graphs to check isomorphism and extracting mapping by using the Conductance Electrical Model

© 2016. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/This paper presents a new method of filtering graphs to check exact graph isomorphism and extracting their mapping. Each graph is modeled by a resistive electrical circuit using the Conductance Electrical Model (CEM). By using this model, a necessary condition to check the isomorphism of two graphs is that their equivalent resistances have the same values, but this is not enough, and we have to look for their mapping to find the sufficient condition. We can compute the isomorphism between two graphs in O(N-3), where N is the order of the graph, if their star resistance values are different, otherwise the computational time is exponential, but only with respect to the number of repeated star resistance values, which usually is very small. We can use this technique to filter graphs that are not isomorphic and in case that they are, we can obtain their node mapping. A distinguishing feature over other methods is that, even if there exists repeated star resistance values, we can extract a partial node mapping (of all the nodes except the repeated ones and their neighbors) in O(N-3). The paper presents the method and its application to detect isomorphic graphs in two well know graph databases, where some graphs have more than 600 nodes. (C) 2016 Elsevier Ltd. All rights reserved.Postprint (author's draft

Stronger ILPs for the Graph Genus Problem

The minimum genus of a graph is an important question in graph theory and a key ingredient in several graph algorithms. However, its computation is NP-hard and turns out to be hard even in practice. Only recently, the first non-trivial approach - based on SAT and ILP (integer linear programming) models - has been presented, but it is unable to successfully tackle graphs of genus larger than 1 in practice. Herein, we show how to improve the ILP formulation. The crucial ingredients are two-fold. First, we show that instead of modeling rotation schemes explicitly, it suffices to optimize over partitions of the (bidirected) arc set A of the graph. Second, we exploit the cycle structure of the graph, explicitly mapping short closed walks on A to faces in the embedding. Besides the theoretical advantages of our models, we show their practical strength by a thorough experimental evaluation. Contrary to the previous approach, we are able to quickly solve many instances of genus > 1