On algebraic and logical specifications of classes of regular languages

AbstractThe paper studies classes of regular languages based on algebraic constraints imposed on transitions of automata and discusses issues related to specifications of these classes from algebraic, computational and logical points of view

Computing downward closures for stacked counter automata

The downward closure of a language $L$ of words is the set of all (not necessarily contiguous) subwords of members of $L$. It is well known that the downward closure of any language is regular. Although the downward closure seems to be a promising abstraction, there are only few language classes for which an automaton for the downward closure is known to be computable. It is shown here that for stacked counter automata, the downward closure is computable. Stacked counter automata are finite automata with a storage mechanism obtained by \emph{adding blind counters} and \emph{building stacks}. Hence, they generalize pushdown and blind counter automata. The class of languages accepted by these automata are precisely those in the hierarchy obtained from the context-free languages by alternating two closure operators: imposing semilinear constraints and taking the algebraic extension. The main tool for computing downward closures is the new concept of Parikh annotations. As a second application of Parikh annotations, it is shown that the hierarchy above is strict at every level.Comment: 34 pages, 1 figure; submitte

Advances and applications of automata on words and trees : abstracts collection

From 12.12.2010 to 17.12.2010, the Dagstuhl Seminar 10501 "Advances and Applications of Automata on Words and Trees" was held in Schloss Dagstuhl - Leibniz Center for Informatics. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available

Logic Meets Algebra: the Case of Regular Languages

The study of finite automata and regular languages is a privileged meeting point of algebra and logic. Since the work of Buchi, regular languages have been classified according to their descriptive complexity, i.e. the type of logical formalism required to define them. The algebraic point of view on automata is an essential complement of this classification: by providing alternative, algebraic characterizations for the classes, it often yields the only opportunity for the design of algorithms that decide expressibility in some logical fragment. We survey the existing results relating the expressibility of regular languages in logical fragments of MSO[S] with algebraic properties of their minimal automata. In particular, we show that many of the best known results in this area share the same underlying mechanics and rely on a very strong relation between logical substitutions and block-products of pseudovarieties of monoid. We also explain the impact of these connections on circuit complexity theory.Comment: 37 page

Parametrized Stochastic Grammars for RNA Secondary Structure Prediction

We propose a two-level stochastic context-free grammar (SCFG) architecture for parametrized stochastic modeling of a family of RNA sequences, including their secondary structure. A stochastic model of this type can be used for maximum a posteriori estimation of the secondary structure of any new sequence in the family. The proposed SCFG architecture models RNA subsequences comprising paired bases as stochastically weighted Dyck-language words, i.e., as weighted balanced-parenthesis expressions. The length of each run of unpaired bases, forming a loop or a bulge, is taken to have a phase-type distribution: that of the hitting time in a finite-state Markov chain. Without loss of generality, each such Markov chain can be taken to have a bounded complexity. The scheme yields an overall family SCFG with a manageable number of parameters.Comment: 5 pages, submitted to the 2007 Information Theory and Applications Workshop (ITA 2007

Towards a Uniform Theory of Effectful State Machines

Using recent developments in coalgebraic and monad-based semantics, we present a uniform study of various notions of machines, e.g. finite state machines, multi-stack machines, Turing machines, valence automata, and weighted automata. They are instances of Jacobs' notion of a T-automaton, where T is a monad. We show that the generic language semantics for T-automata correctly instantiates the usual language semantics for a number of known classes of machines/languages, including regular, context-free, recursively-enumerable and various subclasses of context free languages (e.g. deterministic and real-time ones). Moreover, our approach provides new generic techniques for studying the expressivity power of various machine-based models.Comment: final version accepted by TOC