2,141 research outputs found
Structure fusion based on graph convolutional networks for semi-supervised classification
Suffering from the multi-view data diversity and complexity for
semi-supervised classification, most of existing graph convolutional networks
focus on the networks architecture construction or the salient graph structure
preservation, and ignore the the complete graph structure for semi-supervised
classification contribution. To mine the more complete distribution structure
from multi-view data with the consideration of the specificity and the
commonality, we propose structure fusion based on graph convolutional networks
(SF-GCN) for improving the performance of semi-supervised classification.
SF-GCN can not only retain the special characteristic of each view data by
spectral embedding, but also capture the common style of multi-view data by
distance metric between multi-graph structures. Suppose the linear relationship
between multi-graph structures, we can construct the optimization function of
structure fusion model by balancing the specificity loss and the commonality
loss. By solving this function, we can simultaneously obtain the fusion
spectral embedding from the multi-view data and the fusion structure as
adjacent matrix to input graph convolutional networks for semi-supervised
classification. Experiments demonstrate that the performance of SF-GCN
outperforms that of the state of the arts on three challenging datasets, which
are Cora,Citeseer and Pubmed in citation networks
Metric learning pairwise kernel for graph inference
Much recent work in bioinformatics has focused on the inference of various
types of biological networks, representing gene regulation, metabolic
processes, protein-protein interactions, etc. A common setting involves
inferring network edges in a supervised fashion from a set of high-confidence
edges, possibly characterized by multiple, heterogeneous data sets (protein
sequence, gene expression, etc.). Here, we distinguish between two modes of
inference in this setting: direct inference based upon similarities between
nodes joined by an edge, and indirect inference based upon similarities between
one pair of nodes and another pair of nodes. We propose a supervised approach
for the direct case by translating it into a distance metric learning problem.
A relaxation of the resulting convex optimization problem leads to the support
vector machine (SVM) algorithm with a particular kernel for pairs, which we
call the metric learning pairwise kernel (MLPK). We demonstrate, using several
real biological networks, that this direct approach often improves upon the
state-of-the-art SVM for indirect inference with the tensor product pairwise
kernel
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