18,453 research outputs found

    UMSL Bulletin 2023-2024

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    The 2023-2024 Bulletin and Course Catalog for the University of Missouri St. Louis.https://irl.umsl.edu/bulletin/1088/thumbnail.jp

    HOFA: Twitter Bot Detection with Homophily-Oriented Augmentation and Frequency Adaptive Attention

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    Twitter bot detection has become an increasingly important and challenging task to combat online misinformation, facilitate social content moderation, and safeguard the integrity of social platforms. Though existing graph-based Twitter bot detection methods achieved state-of-the-art performance, they are all based on the homophily assumption, which assumes users with the same label are more likely to be connected, making it easy for Twitter bots to disguise themselves by following a large number of genuine users. To address this issue, we proposed HOFA, a novel graph-based Twitter bot detection framework that combats the heterophilous disguise challenge with a homophily-oriented graph augmentation module (Homo-Aug) and a frequency adaptive attention module (FaAt). Specifically, the Homo-Aug extracts user representations and computes a k-NN graph using an MLP and improves Twitter's homophily by injecting the k-NN graph. For the FaAt, we propose an attention mechanism that adaptively serves as a low-pass filter along a homophilic edge and a high-pass filter along a heterophilic edge, preventing user features from being over-smoothed by their neighborhood. We also introduce a weight guidance loss to guide the frequency adaptive attention module. Our experiments demonstrate that HOFA achieves state-of-the-art performance on three widely-acknowledged Twitter bot detection benchmarks, which significantly outperforms vanilla graph-based bot detection techniques and strong heterophilic baselines. Furthermore, extensive studies confirm the effectiveness of our Homo-Aug and FaAt module, and HOFA's ability to demystify the heterophilous disguise challenge.Comment: 11 pages, 7 figure

    Audio-visual multi-modality driven hybrid feature learning model for crowd analysis and classification

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    The high pace emergence in advanced software systems, low-cost hardware and decentralized cloud computing technologies have broadened the horizon for vision-based surveillance, monitoring and control. However, complex and inferior feature learning over visual artefacts or video streams, especially under extreme conditions confine majority of the at-hand vision-based crowd analysis and classification systems. Retrieving event-sensitive or crowd-type sensitive spatio-temporal features for the different crowd types under extreme conditions is a highly complex task. Consequently, it results in lower accuracy and hence low reliability that confines existing methods for real-time crowd analysis. Despite numerous efforts in vision-based approaches, the lack of acoustic cues often creates ambiguity in crowd classification. On the other hand, the strategic amalgamation of audio-visual features can enable accurate and reliable crowd analysis and classification. Considering it as motivation, in this research a novel audio-visual multi-modality driven hybrid feature learning model is developed for crowd analysis and classification. In this work, a hybrid feature extraction model was applied to extract deep spatio-temporal features by using Gray-Level Co-occurrence Metrics (GLCM) and AlexNet transferrable learning model. Once extracting the different GLCM features and AlexNet deep features, horizontal concatenation was done to fuse the different feature sets. Similarly, for acoustic feature extraction, the audio samples (from the input video) were processed for static (fixed size) sampling, pre-emphasis, block framing and Hann windowing, followed by acoustic feature extraction like GTCC, GTCC-Delta, GTCC-Delta-Delta, MFCC, Spectral Entropy, Spectral Flux, Spectral Slope and Harmonics to Noise Ratio (HNR). Finally, the extracted audio-visual features were fused to yield a composite multi-modal feature set, which is processed for classification using the random forest ensemble classifier. The multi-class classification yields a crowd-classification accurac12529y of (98.26%), precision (98.89%), sensitivity (94.82%), specificity (95.57%), and F-Measure of 98.84%. The robustness of the proposed multi-modality-based crowd analysis model confirms its suitability towards real-world crowd detection and classification tasks

    Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learning

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    Protein-DNA interaction is critical for life activities such as replication, transcription, and splicing. Identifying protein-DNA binding residues is essential for modeling their interaction and downstream studies. However, developing accurate and efficient computational methods for this task remains challenging. Improvements in this area have the potential to drive novel applications in biotechnology and drug design. In this study, we propose a novel approach called CLAPE, which combines a pre-trained protein language model and the contrastive learning method to predict DNA binding residues. We trained the CLAPE-DB model on the protein-DNA binding sites dataset and evaluated the model performance and generalization ability through various experiments. The results showed that the AUC values of the CLAPE-DB model on the two benchmark datasets reached 0.871 and 0.881, respectively, indicating superior performance compared to other existing models. CLAPE-DB showed better generalization ability and was specific to DNA-binding sites. In addition, we trained CLAPE on different protein-ligand binding sites datasets, demonstrating that CLAPE is a general framework for binding sites prediction. To facilitate the scientific community, the benchmark datasets and codes are freely available at https://github.com/YAndrewL/clape

    Machine learning in solar physics

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    The application of machine learning in solar physics has the potential to greatly enhance our understanding of the complex processes that take place in the atmosphere of the Sun. By using techniques such as deep learning, we are now in the position to analyze large amounts of data from solar observations and identify patterns and trends that may not have been apparent using traditional methods. This can help us improve our understanding of explosive events like solar flares, which can have a strong effect on the Earth environment. Predicting hazardous events on Earth becomes crucial for our technological society. Machine learning can also improve our understanding of the inner workings of the sun itself by allowing us to go deeper into the data and to propose more complex models to explain them. Additionally, the use of machine learning can help to automate the analysis of solar data, reducing the need for manual labor and increasing the efficiency of research in this field.Comment: 100 pages, 13 figures, 286 references, accepted for publication as a Living Review in Solar Physics (LRSP

    Sparse Model Soups: A Recipe for Improved Pruning via Model Averaging

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    Neural networks can be significantly compressed by pruning, leading to sparse models requiring considerably less storage and floating-point operations while maintaining predictive performance. Model soups (Wortsman et al., 2022) improve generalization and out-of-distribution performance by averaging the parameters of multiple models into a single one without increased inference time. However, identifying models in the same loss basin to leverage both sparsity and parameter averaging is challenging, as averaging arbitrary sparse models reduces the overall sparsity due to differing sparse connectivities. In this work, we address these challenges by demonstrating that exploring a single retraining phase of Iterative Magnitude Pruning (IMP) with varying hyperparameter configurations, such as batch ordering or weight decay, produces models that are suitable for averaging and share the same sparse connectivity by design. Averaging these models significantly enhances generalization performance compared to their individual components. Building on this idea, we introduce Sparse Model Soups (SMS), a novel method for merging sparse models by initiating each prune-retrain cycle with the averaged model of the previous phase. SMS maintains sparsity, exploits sparse network benefits being modular and fully parallelizable, and substantially improves IMP's performance. Additionally, we demonstrate that SMS can be adapted to enhance the performance of state-of-the-art pruning during training approaches.Comment: 9 pages, 5 pages references, 7 pages appendi

    Defending Black-box Classifiers by Bayesian Boundary Correction

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    Classifiers based on deep neural networks have been recently challenged by Adversarial Attack, where the widely existing vulnerability has invoked the research in defending them from potential threats. Given a vulnerable classifier, existing defense methods are mostly white-box and often require re-training the victim under modified loss functions/training regimes. While the model/data/training specifics of the victim are usually unavailable to the user, re-training is unappealing, if not impossible for reasons such as limited computational resources. To this end, we propose a new black-box defense framework. It can turn any pre-trained classifier into a resilient one with little knowledge of the model specifics. This is achieved by new joint Bayesian treatments on the clean data, the adversarial examples and the classifier, for maximizing their joint probability. It is further equipped with a new post-train strategy which keeps the victim intact. We name our framework Bayesian Boundary Correction (BBC). BBC is a general and flexible framework that can easily adapt to different data types. We instantiate BBC for image classification and skeleton-based human activity recognition, for both static and dynamic data. Exhaustive evaluation shows that BBC has superior robustness and can enhance robustness without severely hurting the clean accuracy, compared with existing defense methods.Comment: arXiv admin note: text overlap with arXiv:2203.0471

    A systematic literature review on source code similarity measurement and clone detection: techniques, applications, and challenges

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    Measuring and evaluating source code similarity is a fundamental software engineering activity that embraces a broad range of applications, including but not limited to code recommendation, duplicate code, plagiarism, malware, and smell detection. This paper proposes a systematic literature review and meta-analysis on code similarity measurement and evaluation techniques to shed light on the existing approaches and their characteristics in different applications. We initially found over 10000 articles by querying four digital libraries and ended up with 136 primary studies in the field. The studies were classified according to their methodology, programming languages, datasets, tools, and applications. A deep investigation reveals 80 software tools, working with eight different techniques on five application domains. Nearly 49% of the tools work on Java programs and 37% support C and C++, while there is no support for many programming languages. A noteworthy point was the existence of 12 datasets related to source code similarity measurement and duplicate codes, of which only eight datasets were publicly accessible. The lack of reliable datasets, empirical evaluations, hybrid methods, and focuses on multi-paradigm languages are the main challenges in the field. Emerging applications of code similarity measurement concentrate on the development phase in addition to the maintenance.Comment: 49 pages, 10 figures, 6 table

    Automatic Calibration and Error Correction for Large Language Models via Pareto Optimal Self-Supervision

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    Large language models (LLMs) have demonstrated remarkable capabilities out of box for a wide range of applications, yet accuracy still remains a major growth area, especially in mission-critical domains such as biomedicine. An effective method to calibrate the confidence level on LLM responses is essential to automatically detect errors and facilitate human-in-the-loop verification. An important source of calibration signals stems from expert-stipulated programmatic supervision, which is often available at low cost but has its own limitations such as noise and coverage. In this paper, we introduce a Pareto optimal self-supervision framework that can leverage available programmatic supervision to systematically calibrate LLM responses by producing a risk score for every response, without any additional manual efforts. This is accomplished by learning a harmonizer model to align LLM output with other available supervision sources, which would assign higher risk scores to more uncertain LLM responses and facilitate error correction. Experiments on standard relation extraction tasks in biomedical and general domains demonstrate the promise of this approach, with our proposed risk scores highly correlated with the real error rate of LLMs. For the most uncertain test instances, dynamic prompting based on our proposed risk scores results in significant accuracy improvement for off-the-shelf LLMs, boosting GPT-3 results past state-of-the-art (SOTA) weak supervision and GPT-4 results past SOTA supervised results on challenging evaluation datasets
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