Kernel-based distance metric learning for microarray data classification

BACKGROUND: The most fundamental task using gene expression data in clinical oncology is to classify tissue samples according to their gene expression levels. Compared with traditional pattern classifications, gene expression-based data classification is typically characterized by high dimensionality and small sample size, which make the task quite challenging. RESULTS: In this paper, we present a modified K-nearest-neighbor (KNN) scheme, which is based on learning an adaptive distance metric in the data space, for cancer classification using microarray data. The distance metric, derived from the procedure of a data-dependent kernel optimization, can substantially increase the class separability of the data and, consequently, lead to a significant improvement in the performance of the KNN classifier. Intensive experiments show that the performance of the proposed kernel-based KNN scheme is competitive to those of some sophisticated classifiers such as support vector machines (SVMs) and the uncorrelated linear discriminant analysis (ULDA) in classifying the gene expression data. CONCLUSION: A novel distance metric is developed and incorporated into the KNN scheme for cancer classification. This metric can substantially increase the class separability of the data in the feature space and, hence, lead to a significant improvement in the performance of the KNN classifier

Maximum Margin Multiclass Nearest Neighbors

We develop a general framework for margin-based multicategory classification in metric spaces. The basic work-horse is a margin-regularized version of the nearest-neighbor classifier. We prove generalization bounds that match the state of the art in sample size $n$ and significantly improve the dependence on the number of classes $k$. Our point of departure is a nearly Bayes-optimal finite-sample risk bound independent of $k$. Although $k$-free, this bound is unregularized and non-adaptive, which motivates our main result: Rademacher and scale-sensitive margin bounds with a logarithmic dependence on $k$. As the best previous risk estimates in this setting were of order $\sqrt k$, our bound is exponentially sharper. From the algorithmic standpoint, in doubling metric spaces our classifier may be trained on $n$ examples in $O(n^2\log n)$ time and evaluated on new points in $O(\log n)$ time

Parametric Local Metric Learning for Nearest Neighbor Classification

We study the problem of learning local metrics for nearest neighbor classification. Most previous works on local metric learning learn a number of local unrelated metrics. While this "independence" approach delivers an increased flexibility its downside is the considerable risk of overfitting. We present a new parametric local metric learning method in which we learn a smooth metric matrix function over the data manifold. Using an approximation error bound of the metric matrix function we learn local metrics as linear combinations of basis metrics defined on anchor points over different regions of the instance space. We constrain the metric matrix function by imposing on the linear combinations manifold regularization which makes the learned metric matrix function vary smoothly along the geodesics of the data manifold. Our metric learning method has excellent performance both in terms of predictive power and scalability. We experimented with several large-scale classification problems, tens of thousands of instances, and compared it with several state of the art metric learning methods, both global and local, as well as to SVM with automatic kernel selection, all of which it outperforms in a significant manner

Exploring Privacy Preservation in Outsourced K-Nearest Neighbors with Multiple Data Owners

The k-nearest neighbors (k-NN) algorithm is a popular and effective classification algorithm. Due to its large storage and computational requirements, it is suitable for cloud outsourcing. However, k-NN is often run on sensitive data such as medical records, user images, or personal information. It is important to protect the privacy of data in an outsourced k-NN system. Prior works have all assumed the data owners (who submit data to the outsourced k-NN system) are a single trusted party. However, we observe that in many practical scenarios, there may be multiple mutually distrusting data owners. In this work, we present the first framing and exploration of privacy preservation in an outsourced k-NN system with multiple data owners. We consider the various threat models introduced by this modification. We discover that under a particularly practical threat model that covers numerous scenarios, there exists a set of adaptive attacks that breach the data privacy of any exact k-NN system. The vulnerability is a result of the mathematical properties of k-NN and its output. Thus, we propose a privacy-preserving alternative system supporting kernel density estimation using a Gaussian kernel, a classification algorithm from the same family as k-NN. In many applications, this similar algorithm serves as a good substitute for k-NN. We additionally investigate solutions for other threat models, often through extensions on prior single data owner systems

Weighted k-Nearest-Neighbor Techniques and Ordinal Classification

In the field of statistical discrimination k-nearest neighbor classification is a well-known, easy and successful method. In this paper we present an extended version of this technique, where the distances of the nearest neighbors can be taken into account. In this sense there is a close connection to LOESS, a local regression technique. In addition we show possibilities to use nearest neighbor for classification in the case of an ordinal class structure. Empirical studies show the advantages of the new techniques

KCRC-LCD: Discriminative Kernel Collaborative Representation with Locality Constrained Dictionary for Visual Categorization

We consider the image classification problem via kernel collaborative representation classification with locality constrained dictionary (KCRC-LCD). Specifically, we propose a kernel collaborative representation classification (KCRC) approach in which kernel method is used to improve the discrimination ability of collaborative representation classification (CRC). We then measure the similarities between the query and atoms in the global dictionary in order to construct a locality constrained dictionary (LCD) for KCRC. In addition, we discuss several similarity measure approaches in LCD and further present a simple yet effective unified similarity measure whose superiority is validated in experiments. There are several appealing aspects associated with LCD. First, LCD can be nicely incorporated under the framework of KCRC. The LCD similarity measure can be kernelized under KCRC, which theoretically links CRC and LCD under the kernel method. Second, KCRC-LCD becomes more scalable to both the training set size and the feature dimension. Example shows that KCRC is able to perfectly classify data with certain distribution, while conventional CRC fails completely. Comprehensive experiments on many public datasets also show that KCRC-LCD is a robust discriminative classifier with both excellent performance and good scalability, being comparable or outperforming many other state-of-the-art approaches