LightRW: FPGA Accelerated Graph Dynamic Random Walks

Graph dynamic random walks (GDRWs) have recently emerged as a powerful paradigm for graph analytics and learning applications, including graph embedding and graph neural networks. Despite the fact that many existing studies optimize the performance of GDRWs on multi-core CPUs, massive random memory accesses and costly synchronizations cause severe resource underutilization, and the processing of GDRWs is usually the key performance bottleneck in many graph applications. This paper studies an alternative architecture, FPGA, to address these issues in GDRWs, as FPGA has the ability of hardware customization so that we are able to explore fine-grained pipeline execution and specialized memory access optimizations. Specifically, we propose {LightRW}, a novel FPGA-based accelerator for GDRWs. LightRW embraces a series of optimizations to enable fine-grained pipeline execution on the chip and to exploit the massive parallelism of FPGA while significantly reducing memory accesses. As current commonly used sampling methods in GDRWs do not efficiently support fine-grained pipeline execution, we develop a parallelized reservoir sampling method to sample multiple vertices per cycle for efficient pipeline execution. To address the random memory access issues, we propose a degree-aware configurable caching method that buffers hot vertices on-chip to alleviate random memory accesses and a dynamic burst access engine that efficiently retrieves neighbors. Experimental results show that our optimization techniques are able to improve the performance of GDRWs on FPGA significantly. Moreover, LightRW delivers up to 9.55x and 9.10x speedup over the state-of-the-art CPU-based MetaPath and Node2vec random walks, respectively. This work is open-sourced on GitHub at https://github.com/Xtra-Computing/LightRW.Comment: Accepted to SIGMOD 202

Towards Neural Path Tracing in SRAM

We present an experimental neural path tracer designed to exploit the large on-chip memory of Graphcore intelligence-processing-units (IPUs). This open source renderer demonstrates how to map path tracing to the novel software and hardware architecture and is a useful tool for analysing in-cache neural-rendering scenarios. Such scenarios will be increasingly important if rasterisation is replaced by combinations of ray/path tracing, neural-radiance caching, and AI denoising/up-scaling, for which small neural networks are already routinely employed. A detailed description of the implementation also serves as a self-contained resource for more general software design on IPU

Runtime-assisted optimizations in the on-chip memory hierarchy

Following Moore's Law, the number of transistors on chip has been increasing exponentially, which has led to the increasing complexity of modern processors. As a result, the efficient programming of such systems has become more difficult. Many programming models have been developed to answer this issue. Of particular interest are task-based programming models that employ simple annotations to define parallel work in an application. The information available at the level of the runtime systems associated with these programming models offers great potential for improving hardware design. Moreover, due to technological limitations, Moore's Law is predicted to eventually come to an end, so novel paradigms are necessary to maintain the current performance improvement trends. The main goal of this thesis is to exploit the knowledge about a parallel application available at the runtime system level to improve the design of the on-chip memory hierarchy. The coupling of the runtime system and the microprocessor enables a better hardware design without hurting the programmability. The first contribution is a set of insertion policies for shared last-level caches that exploit information about tasks and task data dependencies. The intuition behind this proposal revolves around the observation that parallel threads exhibit different memory access patterns. Even within the same thread, accesses to different variables often follow distinct patterns. The proposed policies insert cache lines into different logical positions depending on the dependency type and task type to which the corresponding memory request belongs. The second proposal optimizes the execution of reductions, defined as a programming pattern that combines input data to form the resulting reduction variable. This is achieved with a runtime-assisted technique for performing reductions in the processor's cache hierarchy. The proposal's goal is to be a universally applicable solution regardless of the reduction variable type, size and access pattern. On the software level, the programming model is extended to let a programmer specify the reduction variables for tasks, as well as the desired cache level where a certain reduction will be performed. The source-to-source compiler and the runtime system are extended to translate and forward this information to the underlying hardware. On the hardware level, private and shared caches are equipped with functional units and the accompanying logic to perform reductions at the cache level. This design avoids unnecessary data movements to the core and back as the data is operated at the place where it resides. The third contribution is a runtime-assisted prioritization scheme for memory requests inside the on-chip memory hierarchy. The proposal is based on the notion of a critical path in the context of parallel codes and a known fact that accelerating critical tasks reduces the execution time of the whole application. In the context of this work, task criticality is observed at a level of a task type as it enables simple annotation by the programmer. The acceleration of critical tasks is achieved by the prioritization of corresponding memory requests in the microprocessor.Siguiendo la ley de Moore, el número de transistores en los chips ha crecido exponencialmente, lo que ha comportado una mayor complejidad en los procesadores modernos y, como resultado, de la dificultad de la programación eficiente de estos sistemas. Se han desarrollado muchos modelos de programación para resolver este problema; un ejemplo particular son los modelos de programación basados en tareas, que emplean anotaciones sencillas para definir los Trabajos paralelos de una aplicación. La información de que disponen los sistemas en tiempo de ejecución (runtime systems) asociada con estos modelos de programación ofrece un enorme potencial para la mejora del diseño del hardware. Por otro lado, las limitaciones tecnológicas hacen que la ley de Moore pueda dejar de cumplirse próximamente, por lo que se necesitan paradigmas nuevos para mantener las tendencias actuales de mejora de rendimiento. El objetivo principal de esta tesis es aprovechar el conocimiento de las aplicaciones paral·leles de que dispone el runtime system para mejorar el diseño de la jerarquía de memoria del chip. El acoplamiento del runtime system junto con el microprocesador permite realizar mejores diseños hardware sin afectar Negativamente en la programabilidad de dichos sistemas. La primera contribución de esta tesis consiste en un conjunto de políticas de inserción para las memorias caché compartidas de último nivel que aprovecha la información de las tareas y las dependencias de datos entre estas. La intuición tras esta propuesta se basa en la observación de que los hilos de ejecución paralelos muestran distintos patrones de acceso a memoria e, incluso dentro del mismo hilo, los accesos a diferentes variables a menudo siguen patrones distintos. Las políticas que se proponen insertan líneas de caché en posiciones lógicas diferentes en función de los tipos de dependencia y tarea a los que corresponde la petición de memoria. La segunda propuesta optimiza la ejecución de las reducciones, que se definen como un patrón de programación que combina datos de entrada para conseguir la variable de reducción como resultado. Esto se consigue mediante una técnica asistida por el runtime system para la realización de reducciones en la jerarquía de la caché del procesador, con el objetivo de ser una solución aplicable de forma universal sin depender del tipo de la variable de la reducción, su tamaño o el patrón de acceso. A nivel de software, el modelo de programación se extiende para que el programador especifique las variables de reducción de las tareas, así como el nivel de caché escogido para que se realice una determinada reducción. El compilador fuente a Fuente (compilador source-to-source) y el runtime ssytem se modifican para que traduzcan y pasen esta información al hardware subyacente, evitando así movimientos de datos innecesarios hacia y desde el núcleo del procesador, al realizarse la operación donde se encuentran los datos de la misma. La tercera contribución proporciona un esquema de priorización asistido por el runtime system para peticiones de memoria dentro de la jerarquía de memoria del chip. La propuesta se basa en la noción de camino crítico en el contexto de los códigos paralelos y en el hecho conocido de que acelerar tareas críticas reduce el tiempo de ejecución de la aplicación completa. En el contexto de este trabajo, la criticidad de las tareas se considera a nivel del tipo de tarea ya que permite que el programador las indique mediante anotaciones sencillas. La aceleración de las tareas críticas se consigue priorizando las correspondientes peticiones de memoria en el microprocesador.Seguint la llei de Moore, el nombre de transistors que contenen els xips ha patit un creixement exponencial, fet que ha provocat un augment de la complexitat dels processadors moderns i, per tant, de la dificultat de la programació eficient d’aquests sistemes. Per intentar solucionar-ho, s’han desenvolupat diversos models de programació; un exemple particular en són els models basats en tasques, que fan servir anotacions senzilles per definir treballs paral·lels dins d’una aplicació. La informació que hi ha al nivell dels sistemes en temps d’execució (runtime systems) associada amb aquests models de programació ofereix un gran potencial a l’hora de millorar el disseny del maquinari. D’altra banda, les limitacions tecnològiques fan que la llei de Moore pugui deixar de complir-se properament, per la qual cosa calen nous paradigmes per mantenir les tendències actuals en la millora de rendiment. L’objectiu principal d’aquesta tesi és aprofitar els coneixements que el runtime System té d’una aplicació paral·lela per millorar el disseny de la jerarquia de memòria dins el xip. L’acoblament del runtime system i el microprocessador permet millorar el disseny del maquinari sense malmetre la programabilitat d’aquests sistemes. La primera contribució d’aquesta tesi consisteix en un conjunt de polítiques d’inserció a les memòries cau (cache memories) compartides d’últim nivell que aprofita informació sobre tasques i les dependències de dades entre aquestes. La intuïció que hi ha al darrere d’aquesta proposta es basa en el fet que els fils d’execució paral·lels mostren diferents patrons d’accés a la memòria; fins i tot dins el mateix fil, els accessos a variables diferents sovint segueixen patrons diferents. Les polítiques que s’hi proposen insereixen línies de la memòria cau a diferents ubicacions lògiques en funció dels tipus de dependència i de tasca als quals correspon la petició de memòria. La segona proposta optimitza l’execució de les reduccions, que es defineixen com un patró de programació que combina dades d’entrada per aconseguir la variable de reducció com a resultat. Això s’aconsegueix mitjançant una tècnica assistida pel runtime system per dur a terme reduccions en la jerarquia de la memòria cau del processador, amb l’objectiu que la proposta sigui aplicable de manera universal, sense dependre del tipus de la variable a la qual es realitza la reducció, la seva mida o el patró d’accés. A nivell de programari, es realitza una extensió del model de programació per facilitar que el programador especifiqui les variables de les reduccions que usaran les tasques, així com el nivell de memòria cau desitjat on s’hauria de realitzar una certa reducció. El compilador font a font (compilador source-to-source) i el runtime system s’amplien per traduir i passar aquesta informació al maquinari subjacent. A nivell de maquinari, les memòries cau privades i compartides s’equipen amb unitats funcionals i la lògica corresponent per poder dur a terme les reduccions a la pròpia memòria cau, evitant així moviments de dades innecessaris entre el nucli del processador i la jerarquia de memòria. La tercera contribució proporciona un esquema de priorització assistit pel runtime System per peticions de memòria dins de la jerarquia de memòria del xip. La proposta es basa en la noció de camí crític en el context dels codis paral·lels i en el fet conegut que l’acceleració de les tasques que formen part del camí crític redueix el temps d’execució de l’aplicació sencera. En el context d’aquest treball, la criticitat de les tasques s’observa al nivell del seu tipus ja que permet que el programador les indiqui mitjançant anotacions senzilles. L’acceleració de les tasques crítiques s’aconsegueix prioritzant les corresponents peticions de memòria dins el microprocessador

Memory Subsystem Optimization Techniques for Modern High-Performance General-Purpose Processors

abstract: General-purpose processors propel the advances and innovations that are the subject of humanity’s many endeavors. Catering to this demand, chip-multiprocessors (CMPs) and general-purpose graphics processing units (GPGPUs) have seen many high-performance innovations in their architectures. With these advances, the memory subsystem has become the performance- and energy-limiting aspect of CMPs and GPGPUs alike. This dissertation identifies and mitigates the key performance and energy-efficiency bottlenecks in the memory subsystem of general-purpose processors via novel, practical, microarchitecture and system-architecture solutions. Addressing the important Last Level Cache (LLC) management problem in CMPs, I observe that LLC management decisions made in isolation, as in prior proposals, often lead to sub-optimal system performance. I demonstrate that in order to maximize system performance, it is essential to manage the LLCs while being cognizant of its interaction with the system main memory. I propose ReMAP, which reduces the net memory access cost by evicting cache lines that either have no reuse, or have low memory access cost. ReMAP improves the performance of the CMP system by as much as 13%, and by an average of 6.5%. Rather than the LLC, the L1 data cache has a pronounced impact on GPGPU performance by acting as the bandwidth filter for the rest of the memory subsystem. Prior work has shown that the severely constrained data cache capacity in GPGPUs leads to sub-optimal performance. In this thesis, I propose two novel techniques that address the GPGPU data cache capacity problem. I propose ID-Cache that performs effective cache bypassing and cache line size selection to improve cache capacity utilization. Next, I propose LATTE-CC that considers the GPU’s latency tolerance feature and adaptively compresses the data stored in the data cache, thereby increasing its effective capacity. ID-Cache and LATTE-CC are shown to achieve 71% and 19.2% speedup, respectively, over a wide variety of GPGPU applications. Complementing the aforementioned microarchitecture techniques, I identify the need for system architecture innovations to sustain performance scalability of GPG- PUs in the face of slowing Moore’s Law. I propose a novel GPU architecture called the Multi-Chip-Module GPU (MCM-GPU) that integrates multiple GPU modules to form a single logical GPU. With intelligent memory subsystem optimizations tailored for MCM-GPUs, it can achieve within 7% of the performance of a similar but hypothetical monolithic die GPU. Taking a step further, I present an in-depth study of the energy-efficiency characteristics of future MCM-GPUs. I demonstrate that the inherent non-uniform memory access side-effects form the key energy-efficiency bottleneck in the future. In summary, this thesis offers key insights into the performance and energy-efficiency bottlenecks in CMPs and GPGPUs, which can guide future architects towards developing high-performance and energy-efficient general-purpose processors.Dissertation/ThesisDoctoral Dissertation Computer Science 201

Scalable Emulation of Heterogeneous Systems

The breakdown of Dennard's transistor scaling has driven computing systems toward application-specific accelerators, which can provide orders-of-magnitude improvements in performance and energy efficiency over general-purpose processors. To enable the radical departures from conventional approaches that heterogeneous systems entail, research infrastructure must be able to model processors, memory and accelerators, as well as system-level changes---such as operating system or instruction set architecture (ISA) innovations---that might be needed to realize the accelerators' potential. Unfortunately, existing simulation tools that can support such system-level research are limited by the lack of fast, scalable machine emulators to drive execution. To fill this need, in this dissertation we first present a novel machine emulator design based on dynamic binary translation that makes the following improvements over the state of the art: it scales on multicore hosts while remaining memory efficient, correctly handles cross-ISA differences in atomic instruction semantics, leverages the host floating point (FP) unit to speed up FP emulation without sacrificing correctness, and can be efficiently instrumented to---among other possible uses---drive the execution of a full-system, cross-ISA simulator with support for accelerators. We then demonstrate the utility of machine emulation for studying heterogeneous systems by leveraging it to make two additional contributions. First, we quantify the trade-offs in different coupling models for on-chip accelerators. Second, we present a technique to reuse the private memories of on-chip accelerators when they are otherwise inactive to expand the system's last-level cache, thereby reducing the opportunity cost of the accelerators' integration

Exploiting task-based programming models for resilience

Hardware errors become more common as silicon technologies shrink and become more vulnerable, especially in memory cells, which are the most exposed to errors. Permanent and intermittent faults are caused by manufacturing variability and circuits ageing. While these can be mitigated once they are identified, their continuous rate of appearance throughout the lifetime of memory devices will always cause unexpected errors. In addition, transient faults are caused by effects such as radiation or small voltage/frequency margins, and there is no efficient way to shield against these events. Other constraints related to the diminishing sizes of transistors, such as power consumption and memory latency have caused the microprocessor industry to turn to increasingly complex processor architectures. To solve the difficulties arising from programming such architectures, programming models have emerged that rely on runtime systems. These systems form a new intermediate layer on the hardware-software abstraction stack, that performs tasks such as distributing work across computing resources: processor cores, accelerators, etc. These runtime systems dispose of a lot of information, both from the hardware and the applications, and offer thus many possibilities for optimisations. This thesis proposes solutions to the increasing fault rates in memory, across multiple resilience disciplines, from algorithm-based fault tolerance to hardware error correcting codes, through OS reliability strategies. These solutions rely for their efficiency on the opportunities presented by runtime systems. The first contribution of this thesis is an algorithmic-based resilience technique, allowing to tolerate detected errors in memory. This technique allows to recover data that is lost by performing computations that rely on simple redundancy relations identified in the program. The recovery is demonstrated for a family of iterative solvers, the Krylov subspace methods, and evaluated for the conjugate gradient solver. The runtime can transparently overlap the recovery with the computations of the algorithm, which allows to mask the already low overheads of this technique. The second part of this thesis proposes a metric to characterise the impact of faults in memory, which outperforms state-of-the-art metrics in precision and assurances on the error rate. This metric reveals a key insight into data that is not relevant to the program, and we propose an OS-level strategy to ignore errors in such data, by delaying the reporting of detected errors. This allows to reduce failure rates of running programs, by ignoring errors that have no impact. The architectural-level contribution of this thesis is a dynamically adaptable Error Correcting Code (ECC) scheme, that can increase protection of memory regions where the impact of errors is highest. A runtime methodology is presented to estimate the fault rate at runtime using our metric, through performance monitoring tools of current commodity processors. Guiding the dynamic ECC scheme online using the methodology's vulnerability estimates allows to decrease error rates of programs at a fraction of the redundancy cost required for a uniformly stronger ECC. This provides a useful and wide range of trade-offs between redundancy and error rates. The work presented in this thesis demonstrates that runtime systems allow to make the most of redundancy stored in memory, to help tackle increasing error rates in DRAM. This exploited redundancy can be an inherent part of algorithms that allows to tolerate higher fault rates, or in the form of dead data stored in memory. Redundancy can also be added to a program, in the form of ECC. In all cases, the runtime allows to decrease failure rates efficiently, by diminishing recovery costs, identifying redundant data, or targeting critical data. It is thus a very valuable tool for the future computing systems, as it can perform optimisations across different layers of abstractions.Los errores en memoria se vuelven más comunes a medida que las tecnologías de silicio reducen su tamaño. La variabilidad de fabricación y el envejecimiento de los circuitos causan fallos permanentes e intermitentes. Aunque se pueden mitigar una vez identificados, su continua tasa de aparición siempre causa errores inesperados. Además, la memoria también sufre de fallos transitorios contra los cuales no se puede proteger eficientemente. Estos fallos están causados por efectos como la radiación o los reducidos márgenes de voltaje y frecuencia. Otras restricciones coetáneas, como el consumo de energía y la latencia de la memoria, obligaron a las arquitecturas de computadores a volverse cada vez más complejas. Para programar tales procesadores, se desarrollaron modelos de programación basados en entornos de ejecución. Estos sistemas forman una nueva abstracción entre hardware y software, realizando tareas como la distribución del trabajo entre recursos informáticos: núcleos de procesadores, aceleradores, etc. Estos entornos de ejecución disponen de mucha información tanto sobre el hardware como sobre las aplicaciones, y ofrecen así muchas posibilidades de optimización. Esta tesis propone soluciones a los fallos en memoria entre múltiples disciplinas de resiliencia, desde la tolerancia a fallos basada en algoritmos, hasta los códigos de corrección de errores en hardware, incluyendo estrategias de resiliencia del sistema operativo. La eficiencia de estas soluciones depende de las oportunidades que presentan los entornos de ejecución. La primera contribución de esta tesis es una técnica a nivel algorítmico que permite corregir fallos encontrados mientras el programa su ejecuta. Para corregir fallos se han identificado redundancias simples en los datos del programa para toda una clase de algoritmos, los métodos del subespacio de Krylov (gradiente conjugado, GMRES, etc). La estrategia de recuperación de datos desarrollada permite corregir errores sin tener que reinicializar el algoritmo, y aprovecha el modelo de programación para superponer las computaciones del algoritmo y de la recuperación de datos. La segunda parte de esta tesis propone una métrica para caracterizar el impacto de los fallos en la memoria. Esta métrica supera en precisión a las métricas de vanguardia y permite identificar datos que son menos relevantes para el programa. Se propone una estrategia a nivel del sistema operativo retrasando la notificación de los errores detectados, que permite ignorar fallos en estos datos y reducir la tasa de fracaso del programa. Por último, la contribución a nivel arquitectónico de esta tesis es un esquema de Código de Corrección de Errores (ECC por sus siglas en inglés) adaptable dinámicamente. Este esquema puede aumentar la protección de las regiones de memoria donde el impacto de los errores es mayor. Se presenta una metodología para estimar el riesgo de fallo en tiempo de ejecución utilizando nuestra métrica, a través de las herramientas de monitorización del rendimiento disponibles en los procesadores actuales. El esquema de ECC guiado dinámicamente con estas estimaciones de vulnerabilidad permite disminuir la tasa de fracaso de los programas a una fracción del coste de redundancia requerido para un ECC uniformemente más fuerte. El trabajo presentado en esta tesis demuestra que los entornos de ejecución permiten aprovechar al máximo la redundancia contenida en la memoria, para contener el aumento de los errores en ella. Esta redundancia explotada puede ser una parte inherente de los algoritmos que permite tolerar más fallos, en forma de datos inutilizados almacenados en la memoria, o agregada a la memoria de un programa en forma de ECC. En todos los casos, el entorno de ejecución permite disminuir los efectos de los fallos de manera eficiente, disminuyendo los costes de recuperación, identificando datos redundantes, o focalizando esfuerzos de protección en los datos críticos.Postprint (published version

A database accelerator for energy-efficient query processing and optimization

Data processing on a continuously growing amount of information and the increasing power restrictions have become an ubiquitous challenge in our world today. Besides parallel computing, a promising approach to improve the energy efficiency of current systems is to integrate specialized hardware. This paper presents a Tensilica RISC processor extended with an instruction set to accelerate basic database operators frequently used in modern database systems. The core was taped out in a 28 nm SLP CMOS technology and allows energy-efficient query processing as well as query optimization by applying selectivity estimation techniques. Our chip measurements show an 1000x energy improvement on selected database operators compared to state-of-the-art systems

Interactive Visualization of the Largest Radioastronomy Cubes

3D visualization is an important data analysis and knowledge discovery tool, however, interactive visualization of large 3D astronomical datasets poses a challenge for many existing data visualization packages. We present a solution to interactively visualize larger-than-memory 3D astronomical data cubes by utilizing a heterogeneous cluster of CPUs and GPUs. The system partitions the data volume into smaller sub-volumes that are distributed over the rendering workstations. A GPU-based ray casting volume rendering is performed to generate images for each sub-volume, which are composited to generate the whole volume output, and returned to the user. Datasets including the HI Parkes All Sky Survey (HIPASS - 12 GB) southern sky and the Galactic All Sky Survey (GASS - 26 GB) data cubes were used to demonstrate our framework's performance. The framework can render the GASS data cube with a maximum render time < 0.3 second with 1024 x 1024 pixels output resolution using 3 rendering workstations and 8 GPUs. Our framework will scale to visualize larger datasets, even of Terabyte order, if proper hardware infrastructure is available.Comment: 15 pages, 12 figures, Accepted New Astronomy July 201