An Automatic Level Set Based Liver Segmentation from MRI Data Sets

A fast and accurate liver segmentation method is a challenging work in medical image analysis area. Liver segmentation is an important process for computer-assisted diagnosis, pre-evaluation of liver transplantation and therapy planning of liver tumors. There are several advantages of magnetic resonance imaging such as free form ionizing radiation and good contrast visualization of soft tissue. Also, innovations in recent technology and image acquisition techniques have made magnetic resonance imaging a major tool in modern medicine. However, the use of magnetic resonance images for liver segmentation has been slow when we compare applications with the central nervous systems and musculoskeletal. The reasons are irregular shape, size and position of the liver, contrast agent effects and similarities of the gray values of neighbor organs. Therefore, in this study, we present a fully automatic liver segmentation method by using an approximation of the level set based contour evolution from T2 weighted magnetic resonance data sets. The method avoids solving partial differential equations and applies only integer operations with a two-cycle segmentation algorithm. The efficiency of the proposed approach is achieved by applying the algorithm to all slices with a constant number of iteration and performing the contour evolution without any user defined initial contour. The obtained results are evaluated with four different similarity measures and they show that the automatic segmentation approach gives successful results

Coupled non-parametric shape and moment-based inter-shape pose priors for multiple basal ganglia structure segmentation

This paper presents a new active contour-based, statistical method for simultaneous volumetric segmentation of multiple subcortical structures in the brain. In biological tissues, such as the human brain, neighboring structures exhibit co-dependencies which can aid in segmentation, if properly analyzed and modeled. Motivated by this observation, we formulate the segmentation problem as a maximum a posteriori estimation problem, in which we incorporate statistical prior models on the shapes and inter-shape (relative) poses of the structures of interest. This provides a principled mechanism to bring high level information about the shapes and the relationships of anatomical structures into the segmentation problem. For learning the prior densities we use a nonparametric multivariate kernel density estimation framework. We combine these priors with data in a variational framework and develop an active contour-based iterative segmentation algorithm. We test our method on the problem of volumetric segmentation of basal ganglia structures in magnetic resonance (MR) images. We present a set of 2D and 3D experiments as well as a quantitative performance analysis. In addition, we perform a comparison to several existent segmentation methods and demonstrate the improvements provided by our approach in terms of segmentation accuracy

Multiresolution hierarchy co-clustering for semantic segmentation in sequences with small variations

This paper presents a co-clustering technique that, given a collection of images and their hierarchies, clusters nodes from these hierarchies to obtain a coherent multiresolution representation of the image collection. We formalize the co-clustering as a Quadratic Semi-Assignment Problem and solve it with a linear programming relaxation approach that makes effective use of information from hierarchies. Initially, we address the problem of generating an optimal, coherent partition per image and, afterwards, we extend this method to a multiresolution framework. Finally, we particularize this framework to an iterative multiresolution video segmentation algorithm in sequences with small variations. We evaluate the algorithm on the Video Occlusion/Object Boundary Detection Dataset, showing that it produces state-of-the-art results in these scenarios.Comment: International Conference on Computer Vision (ICCV) 201

Active Contour Models for Manifold Valued Image Segmentation

Image segmentation is the process of partitioning a image into different regions or groups based on some characteristics like color, texture, motion or shape etc. Active contours is a popular variational method for object segmentation in images, in which the user initializes a contour which evolves in order to optimize an objective function designed such that the desired object boundary is the optimal solution. Recently, imaging modalities that produce Manifold valued images have come up, for example, DT-MRI images, vector fields. The traditional active contour model does not work on such images. In this paper, we generalize the active contour model to work on Manifold valued images. As expected, our algorithm detects regions with similar Manifold values in the image. Our algorithm also produces expected results on usual gray-scale images, since these are nothing but trivial examples of Manifold valued images. As another application of our general active contour model, we perform texture segmentation on gray-scale images by first creating an appropriate Manifold valued image. We demonstrate segmentation results for manifold valued images and texture images

A Generic Framework for Tracking Using Particle Filter With Dynamic Shape Prior

©2007 IEEE. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or distribution to servers or lists, or to reuse any copyrighted component of this work in other works must be obtained from the IEEE. This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder.DOI: 10.1109/TIP.2007.894244Tracking deforming objects involves estimating the global motion of the object and its local deformations as functions of time. Tracking algorithms using Kalman filters or particle filters (PFs) have been proposed for tracking such objects, but these have limitations due to the lack of dynamic shape information. In this paper, we propose a novel method based on employing a locally linear embedding in order to incorporate dynamic shape information into the particle filtering framework for tracking highly deformable objects in the presence of noise and clutter. The PF also models image statistics such as mean and variance of the given data which can be useful in obtaining proper separation of object and backgroun