Longest Common Subsequence with Gap Constraints

We consider the longest common subsequence problem in the context of subsequences with gap constraints. In particular, following Day et al. 2022, we consider the setting when the distance (i. e., the gap) between two consecutive symbols of the subsequence has to be between a lower and an upper bound (which may depend on the position of those symbols in the subsequence or on the symbols bordering the gap) as well as the case where the entire subsequence is found in a bounded range (defined by a single upper bound), considered by Kosche et al. 2022. In all these cases, we present effcient algorithms for determining the length of the longest common constrained subsequence between two given strings

The Edit Distance to k-Subsequence Universality

A word u is a subsequence of another word w if u can be obtained from w by deleting some of its letters. In the early 1970s, Imre Simon defined the relation ?_k (called now Simon-Congruence) as follows: two words having exactly the same set of subsequences of length at most k are ?_k-congruent. This relation was central in defining and analysing piecewise testable languages, but has found many applications in areas such as algorithmic learning theory, databases theory, or computational linguistics. Recently, it was shown that testing whether two words are ?_k-congruent can be done in optimal linear time. Thus, it is a natural next step to ask, for two words w and u which are not ?_k-equivalent, what is the minimal number of edit operations that we need to perform on w in order to obtain a word which is ?_k-equivalent to u. In this paper, we consider this problem in a setting which seems interesting: when u is a k-subsequence universal word. A word u with alph(u) = ? is called k-subsequence universal if the set of subsequences of length k of u contains all possible words of length k over ?. As such, our results are a series of efficient algorithms computing the edit distance from w to the language of k-subsequence universal words

Combinatorial Algorithms for Subsequence Matching: A Survey

In this paper we provide an overview of a series of recent results regarding algorithms for searching for subsequences in words or for the analysis of the sets of subsequences occurring in a word.Comment: This is a revised version of the paper with the same title which appeared in the Proceedings of NCMA 2022, EPTCS 367, 2022, pp. 11-27 (DOI: 10.4204/EPTCS.367.2). The revision consists in citing a series of relevant references which were not covered in the initial version, and commenting on how they relate to the results we survey. arXiv admin note: text overlap with arXiv:2206.1389

Subsequences in Bounded Ranges: Matching and Analysis Problems

In this paper, we consider a variant of the classical algorithmic problem of checking whether a given word $v$ is a subsequence of another word $w$. More precisely, we consider the problem of deciding, given a number $p$ (defining a range-bound) and two words $v$ and $w$, whether there exists a factor $w[i:i+p-1]$ (or, in other words, a range of length $p$) of $w$ having $v$ as subsequence (i.\,e., $v$ occurs as a subsequence in the bounded range $w[i:i+p-1]$). We give matching upper and lower quadratic bounds for the time complexity of this problem. Further, we consider a series of algorithmic problems in this setting, in which, for given integers $k$, $p$ and a word $w$, we analyse the set $p$-Subseq$_{k}(w)$ of all words of length $k$ which occur as subsequence of some factor of length $p$ of $w$. Among these, we consider the $k$-universality problem, the $k$-equivalence problem, as well as problems related to absent subsequences. Surprisingly, unlike the case of the classical model of subsequences in words where such problems have efficient solutions in general, we show that most of these problems become intractable in the new setting when subsequences in bounded ranges are considered. Finally, we provide an example of how some of our results can be applied to subsequence matching problems for circular words.Comment: Extended version of a paper which will appear in the proceedings of the 16th International Conference on Reachability Problems, RP 202

Mathematical Logic and Its Applications 2020

The issue "Mathematical Logic and Its Applications 2020" contains articles related to the following three directions: Descriptive Set Theory (3 articles). Solutions for long-standing problems, including those of A. Tarski and H. Friedman, are presented. Exact combinatorial optimization algorithms, in which the complexity relative to the source data is characterized by a low, or even first degree, polynomial (1 article). III. Applications of mathematical logic and the theory of algorithms (2 articles). The first article deals with the Jacobian and M. Kontsevich’s conjectures, and algorithmic undecidability; for these purposes, non-standard analysis is used. The second article provides a quantitative description of the balance and adaptive resource of a human. Submissions are invited for the next issue "Mathematical Logic and Its Applications 2021