Estimation of skeletal kinematics in freely moving rodents

Forming a complete picture of the relationship between neural activity and skeletal kinematics requires quantification of skeletal joint biomechanics during free behavior; however, without detailed knowledge of the underlying skeletal motion, inferring limb kinematics using surface-tracking approaches is difficult, especially for animals where the relationship between the surface and underlying skeleton changes during motion. Here we developed a videography-based method enabling detailed three-dimensional kinematic quantification of an anatomically defined skeleton in untethered freely behaving rats and mice. This skeleton-based model was constrained using anatomical principles and joint motion limits and provided skeletal pose estimates for a range of body sizes, even when limbs were occluded. Model-inferred limb positions and joint kinematics during gait and gap-crossing behaviors were verified by direct measurement of either limb placement or limb kinematics using inertial measurement units. Together we show that complex decision-making behaviors can be accurately reconstructed at the level of skeletal kinematics using our anatomically constrained model

Scalable Estimation of Precision Maps in a MapReduce Framework

This paper presents a large-scale strip adjustment method for LiDAR mobile mapping data, yielding highly precise maps. It uses several concepts to achieve scalability. First, an efficient graph-based pre-segmentation is used, which directly operates on LiDAR scan strip data, rather than on point clouds. Second, observation equations are obtained from a dense matching, which is formulated in terms of an estimation of a latent map. As a result of this formulation, the number of observation equations is not quadratic, but rather linear in the number of scan strips. Third, the dynamic Bayes network, which results from all observation and condition equations, is partitioned into two sub-networks. Consequently, the estimation matrices for all position and orientation corrections are linear instead of quadratic in the number of unknowns and can be solved very efficiently using an alternating least squares approach. It is shown how this approach can be mapped to a standard key/value MapReduce implementation, where each of the processing nodes operates independently on small chunks of data, leading to essentially linear scalability. Results are demonstrated for a dataset of one billion measured LiDAR points and 278,000 unknowns, leading to maps with a precision of a few millimeters.Comment: ACM SIGSPATIAL'16, October 31-November 03, 2016, Burlingame, CA, US