82 research outputs found
Optimizing Phylogenetic Supertrees Using Answer Set Programming
The supertree construction problem is about combining several phylogenetic
trees with possibly conflicting information into a single tree that has all the
leaves of the source trees as its leaves and the relationships between the
leaves are as consistent with the source trees as possible. This leads to an
optimization problem that is computationally challenging and typically
heuristic methods, such as matrix representation with parsimony (MRP), are
used. In this paper we consider the use of answer set programming to solve the
supertree construction problem in terms of two alternative encodings. The first
is based on an existing encoding of trees using substructures known as
quartets, while the other novel encoding captures the relationships present in
trees through direct projections. We use these encodings to compute a
genus-level supertree for the family of cats (Felidae). Furthermore, we compare
our results to recent supertrees obtained by the MRP method.Comment: To appear in Theory and Practice of Logic Programming (TPLP),
Proceedings of ICLP 201
Answer Set Programming Modulo `Space-Time'
We present ASP Modulo `Space-Time', a declarative representational and
computational framework to perform commonsense reasoning about regions with
both spatial and temporal components. Supported are capabilities for mixed
qualitative-quantitative reasoning, consistency checking, and inferring
compositions of space-time relations; these capabilities combine and synergise
for applications in a range of AI application areas where the processing and
interpretation of spatio-temporal data is crucial. The framework and resulting
system is the only general KR-based method for declaratively reasoning about
the dynamics of `space-time' regions as first-class objects. We present an
empirical evaluation (with scalability and robustness results), and include
diverse application examples involving interpretation and control tasks
Advanced Algorithms for Abstract Dialectical Frameworks based on Complexity Analysis of Subclasses and SAT Solving
dialectical frameworks (ADFs) constitute one of the most powerful formalisms in abstract argumentation. Their high computational complexity poses, however, certain challenges when designing efficient systems. In this paper, we tackle this issue by (i) analyzing the complexity of ADFs under structural restrictions, (ii) presenting novel algorithms which make use of these insights, and (iii) implementing these algorithms via (multiple) calls to SAT solvers. An empirical evaluation of the resulting implementation on ADF benchmarks generated from ICCMA competitions shows that our solver is able to outperform state-of-the-art ADF systems. (c) 2022 The Author(s). Published by Elsevier B.V.Peer reviewe
Constraint-based Causal Discovery for Non-Linear Structural Causal Models with Cycles and Latent Confounders
We address the problem of causal discovery from data, making use of the
recently proposed causal modeling framework of modular structural causal models
(mSCM) to handle cycles, latent confounders and non-linearities. We introduce
{\sigma}-connection graphs ({\sigma}-CG), a new class of mixed graphs
(containing undirected, bidirected and directed edges) with additional
structure, and extend the concept of {\sigma}-separation, the appropriate
generalization of the well-known notion of d-separation in this setting, to
apply to {\sigma}-CGs. We prove the closedness of {\sigma}-separation under
marginalisation and conditioning and exploit this to implement a test of
{\sigma}-separation on a {\sigma}-CG. This then leads us to the first causal
discovery algorithm that can handle non-linear functional relations, latent
confounders, cyclic causal relationships, and data from different (stochastic)
perfect interventions. As a proof of concept, we show on synthetic data how
well the algorithm recovers features of the causal graph of modular structural
causal models.Comment: Accepted for publication in Conference on Uncertainty in Artificial
Intelligence 201
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