Toric geometry of the 3-Kimura model for any tree

In this paper we present geometric features of group based models. We focus on the 3-Kimura model. We present a precise geometric description of the variety associated to any tree on a Zariski open set. In particular this set contains all biologically meaningful points. Our motivation is a conjecture of Sturmfels and Sullivant on the degree in which the ideal associated to 3-Kimura model is generated

Whitney tower concordance of classical links

This paper computes Whitney tower filtrations of classical links. Whitney towers consist of iterated stages of Whitney disks and allow a tree-valued intersection theory, showing that the associated graded quotients of the filtration are finitely generated abelian groups. Twisted Whitney towers are studied and a new quadratic refinement of the intersection theory is introduced, measuring Whitney disk framing obstructions. It is shown that the filtrations are completely classified by Milnor invariants together with new higher-order Sato-Levine and higher-order Arf invariants, which are obstructions to framing a twisted Whitney tower in the 4-ball bounded by a link in the 3-sphere. Applications include computation of the grope filtration, and new geometric characterizations of Milnor's link invariants.Comment: Only change is the addition of this comment: This paper subsumes the entire preprint "Geometric Filtrations of Classical Link Concordance" (arXiv:1101.3477v2 [math.GT]) and the first six sections of the preprint "Universal Quadratic Forms and Untwisting Whitney Towers" (arXiv:1101.3480v2 [math.GT]

Local description of phylogenetic group-based models

Motivated by phylogenetics, our aim is to obtain a system of equations that define a phylogenetic variety on an open set containing the biologically meaningful points. In this paper we consider phylogenetic varieties defined via group-based models. For any finite abelian group $G$, we provide an explicit construction of $codim X$ phylogenetic invariants (polynomial equations) of degree at most $|G|$ that define the variety $X$ on a Zariski open set $U$. The set $U$ contains all biologically meaningful points when $G$ is the group of the Kimura 3-parameter model. In particular, our main result confirms a conjecture by the third author and, on the set $U$, a couple of conjectures by Bernd Sturmfels and Seth Sullivant.Comment: 22 pages, 7 figure

Higher Order Intersections in Low-Dimensional Topology

We show how to measure the failure of the Whitney trick in dimension 4 by constructing higher- order intersection invariants of Whitney towers built from iterated Whitney disks on immersed surfaces in 4-manifolds. For Whitney towers on immersed disks in the 4-ball, we identify some of these new invariants with previously known link invariants like Milnor, Sato-Levine and Arf invariants. We also define higher- order Sato-Levine and Arf invariants and show that these invariants detect the obstructions to framing a twisted Whitney tower. Together with Milnor invariants, these higher-order invariants are shown to classify the existence of (twisted) Whitney towers of increasing order in the 4-ball. A conjecture regarding the non- triviality of the higher-order Arf invariants is formulated, and related implications for filtrations of string links and 3-dimensional homology cylinders are described. This article is an announcement and summary of results to be published in several forthcoming papers

The Jacobian Conjecture as a Problem of Perturbative Quantum Field Theory

The Jacobian conjecture is an old unsolved problem in mathematics, which has been unsuccessfully attacked from many different angles. We add here another point of view pertaining to the so called formal inverse approach, that of perturbative quantum field theory.Comment: 22 pages, 13 diagram