Graph Creation, Visualisation and Transformation

We describe a tool to create, edit, visualise and compute with interaction nets - a form of graph rewriting systems. The editor, called GraphPaper, allows users to create and edit graphs and their transformation rules using an intuitive user interface. The editor uses the functionalities of the TULIP system, which gives us access to a wealth of visualisation algorithms. Interaction nets are not only a formalism for the specification of graphs, but also a rewrite-based computation model. We discuss graph rewriting strategies and a language to express them in order to perform strategic interaction net rewriting

Evaluating the performance of model transformation styles in Maude

Rule-based programming has been shown to be very successful in many application areas. Two prominent examples are the specification of model transformations in model driven development approaches and the definition of structured operational semantics of formal languages. General rewriting frameworks such as Maude are flexible enough to allow the programmer to adopt and mix various rule styles. The choice between styles can be biased by the programmer’s background. For instance, experts in visual formalisms might prefer graph-rewriting styles, while experts in semantics might prefer structurally inductive rules. This paper evaluates the performance of different rule styles on a significant benchmark taken from the literature on model transformation. Depending on the actual transformation being carried out, our results show that different rule styles can offer drastically different performances. We point out the situations from which each rule style benefits to offer a valuable set of hints for choosing one style over the other

CAViT: a Consistency Maintenance Framework based on Transformation Contracts

Design by contract is a software correctness methodology for procedural and object-oriented software. It relies on logical assertions to detect implementation mistakes at run-time or to proof the absence thereof at compile-time. Design by contract has found a new application in model driven engineering, a methodology that aims to manage the complexity of frameworks by relying on models and transformations. A ``transformation contract\u27\u27 is a pair of constraints that together describe the effect of a transformation rule on the set of models contained in its transformation definition: the postcondition describes the model consistency state that the rule can establish provided that its precondition is satisfied. A transformation contract of a rule can be maintained automatically by calling the rule (1) as soon as the invariant corresponding to its postcondition is violated and (2) provided that its precondition is satisfied. Domain specific visual languages can facilitate the implementation of the actual transformation rules since they hide the complexity of graph transformation algorithms and standards for tool interoperability. In this talk, we describe CAViT: a framework that integrates a visual model transformation tool with a design by contract tool by relying on OMG standards such as UML, OCL and MOF

A Port Graph Rewriting Approach to Relational Database Modelling

International audienceWe present new algorithms to compute the Syntactic Closure and the Minimal Cover of a set of functional dependencies, using strategic port graph rewriting. We specify a Visual Domain Specific Language to model relational database schemata as port graphs, and provide an extension to port graph rewriting rules. Using these rules we implement strategies to compute a syntactic closure, analyse it and find minimal covers, essential for schema normalisation. The graph program provides a visual description of the computation steps coupled with analysis features not available in other approaches. We prove soundness and completeness of the computed closure. This methodology is implemented in PORGY

06472 Abstracts Collection - XQuery Implementation Paradigms

From 19.11.2006 to 22.11.2006, the Dagstuhl Seminar 06472 ``XQuery Implementation Paradigms'' was held in the International Conference and Research Center (IBFI), Schloss Dagstuhl. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available

Generic Strategies for Chemical Space Exploration

Computational approaches to exploring "chemical universes", i.e., very large sets, potentially infinite sets of compounds that can be constructed by a prescribed collection of reaction mechanisms, in practice suffer from a combinatorial explosion. It quickly becomes impossible to test, for all pairs of compounds in a rapidly growing network, whether they can react with each other. More sophisticated and efficient strategies are therefore required to construct very large chemical reaction networks. Undirected labeled graphs and graph rewriting are natural models of chemical compounds and chemical reactions. Borrowing the idea of partial evaluation from functional programming, we introduce partial applications of rewrite rules. Binding substrate to rules increases the number of rules but drastically prunes the substrate sets to which it might match, resulting in dramatically reduced resource requirements. At the same time, exploration strategies can be guided, e.g. based on restrictions on the product molecules to avoid the explicit enumeration of very unlikely compounds. To this end we introduce here a generic framework for the specification of exploration strategies in graph-rewriting systems. Using key examples of complex chemical networks from sugar chemistry and the realm of metabolic networks we demonstrate the feasibility of a high-level strategy framework. The ideas presented here can not only be used for a strategy-based chemical space exploration that has close correspondence of experimental results, but are much more general. In particular, the framework can be used to emulate higher-level transformation models such as illustrated in a small puzzle game