Complexity Theory and the Operational Structure of Algebraic Programming Systems

An algebraic programming system is a language built from a fixed algebraic data abstraction and a selection of deterministic, and non-deterministic, assignment and control constructs. First, we give a detailed analysis of the operational structure of an algebraic data type, one which is designed to classify programming systems in terms of the complexity of their implementations. Secondly, we test our operational description by comparing the computations in deterministic and non-deterministic programming systems under certain space and time restrictions

Toward an architecture for quantum programming

It is becoming increasingly clear that, if a useful device for quantum computation will ever be built, it will be embodied by a classical computing machine with control over a truly quantum subsystem, this apparatus performing a mixture of classical and quantum computation. This paper investigates a possible approach to the problem of programming such machines: a template high level quantum language is presented which complements a generic general purpose classical language with a set of quantum primitives. The underlying scheme involves a run-time environment which calculates the byte-code for the quantum operations and pipes it to a quantum device controller or to a simulator. This language can compactly express existing quantum algorithms and reduce them to sequences of elementary operations; it also easily lends itself to automatic, hardware independent, circuit simplification. A publicly available preliminary implementation of the proposed ideas has been realized using the C++ language.Comment: 23 pages, 5 figures, A4paper. Final version accepted by EJPD ("swap" replaced by "invert" for Qops). Preliminary implementation available at: http://sra.itc.it/people/serafini/quantum-computing/qlang.htm

On the Computational Complexity of MCMC-based Estimators in Large Samples

In this paper we examine the implications of the statistical large sample theory for the computational complexity of Bayesian and quasi-Bayesian estimation carried out using Metropolis random walks. Our analysis is motivated by the Laplace-Bernstein-Von Mises central limit theorem, which states that in large samples the posterior or quasi-posterior approaches a normal density. Using the conditions required for the central limit theorem to hold, we establish polynomial bounds on the computational complexity of general Metropolis random walks methods in large samples. Our analysis covers cases where the underlying log-likelihood or extremum criterion function is possibly non-concave, discontinuous, and with increasing parameter dimension. However, the central limit theorem restricts the deviations from continuity and log-concavity of the log-likelihood or extremum criterion function in a very specific manner. Under minimal assumptions required for the central limit theorem to hold under the increasing parameter dimension, we show that the Metropolis algorithm is theoretically efficient even for the canonical Gaussian walk which is studied in detail. Specifically, we show that the running time of the algorithm in large samples is bounded in probability by a polynomial in the parameter dimension $d$, and, in particular, is of stochastic order $d^2$ in the leading cases after the burn-in period. We then give applications to exponential families, curved exponential families, and Z-estimation of increasing dimension.Comment: 36 pages, 2 figure

Programmability of Chemical Reaction Networks

Motivated by the intriguing complexity of biochemical circuitry within individual cells we study Stochastic Chemical Reaction Networks (SCRNs), a formal model that considers a set of chemical reactions acting on a finite number of molecules in a well-stirred solution according to standard chemical kinetics equations. SCRNs have been widely used for describing naturally occurring (bio)chemical systems, and with the advent of synthetic biology they become a promising language for the design of artificial biochemical circuits. Our interest here is the computational power of SCRNs and how they relate to more conventional models of computation. We survey known connections and give new connections between SCRNs and Boolean Logic Circuits, Vector Addition Systems, Petri Nets, Gate Implementability, Primitive Recursive Functions, Register Machines, Fractran, and Turing Machines. A theme to these investigations is the thin line between decidable and undecidable questions about SCRN behavior

Vector Addition System Reversible Reachability Problem

The reachability problem for vector addition systems is a central problem of net theory. This problem is known to be decidable but the complexity is still unknown. Whereas the problem is EXPSPACE-hard, no elementary upper bounds complexity are known. In this paper we consider the reversible reachability problem. This problem consists to decide if two configurations are reachable one from each other, or equivalently if they are in the same strongly connected component of the reachability graph. We show that this problem is EXPSPACE-complete. As an application of the introduced materials we characterize the reversibility domains of a vector addition system

The combinatorics of biased riffle shuffles

This paper studies biased riffle shuffles, first defined by Diaconis, Fill, and Pitman. These shuffles generalize the well-studied Gilbert-Shannon-Reeds shuffle and convolve nicely. An upper bound is given for the time for these shuffles to converge to the uniform distribution; this matches lower bounds of Lalley. A careful version of a bijection of Gessel leads to a generating function for cycle structure after one of these shuffles and gives new results about descents in random permutations. Results are also obtained about the inversion and descent structure of a permutation after one of these shuffles.Comment: 11 page