363 research outputs found
Algorithms for Neural Prosthetic Applications
abstract: In the last 15 years, there has been a significant increase in the number of motor neural prostheses used for restoring limb function lost due to neurological disorders or accidents. The aim of this technology is to enable patients to control a motor prosthesis using their residual neural pathways (central or peripheral). Recent studies in non-human primates and humans have shown the possibility of controlling a prosthesis for accomplishing varied tasks such as self-feeding, typing, reaching, grasping, and performing fine dexterous movements. A neural decoding system comprises mainly of three components: (i) sensors to record neural signals, (ii) an algorithm to map neural recordings to upper limb kinematics and (iii) a prosthetic arm actuated by control signals generated by the algorithm. Machine learning algorithms that map input neural activity to the output kinematics (like finger trajectory) form the core of the neural decoding system. The choice of the algorithm is thus, mainly imposed by the neural signal of interest and the output parameter being decoded. The various parts of a neural decoding system are neural data, feature extraction, feature selection, and machine learning algorithm. There have been significant advances in the field of neural prosthetic applications. But there are challenges for translating a neural prosthesis from a laboratory setting to a clinical environment. To achieve a fully functional prosthetic device with maximum user compliance and acceptance, these factors need to be addressed and taken into consideration. Three challenges in developing robust neural decoding systems were addressed by exploring neural variability in the peripheral nervous system for dexterous finger movements, feature selection methods based on clinically relevant metrics and a novel method for decoding dexterous finger movements based on ensemble methods.Dissertation/ThesisDoctoral Dissertation Bioengineering 201
In silico vs. Over the Clouds: On-the-Fly Mental State Estimation of Aircraft Pilots, Using a Functional Near Infrared Spectroscopy Based Passive-BCI
There is growing interest for implementing tools to monitor cognitive performance in naturalistic work and everyday life settings. The emerging field of research, known as neuroergonomics, promotes the use of wearable and portable brain monitoring sensors such as functional near infrared spectroscopy (fNIRS) to investigate cortical activity in a variety of human tasks out of the laboratory. The objective of this study was to implement an on-line passive fNIRS-based brain computer interface to discriminate two levels of working memory load during highly ecological aircraft piloting tasks. Twenty eight recruited pilots were equally split into two groups (flight simulator vs. real aircraft). In both cases, identical approaches and experimental stimuli were used (serial memorization task, consisting in repeating series of pre-recorded air traffic control instructions, easy vs. hard). The results show pilots in the real flight condition committed more errors and had higher anterior prefrontal cortex activation than pilots in the simulator, when completing cognitively demanding tasks. Nevertheless, evaluation of single trial working memory load classification showed high accuracy (>76%) across both experimental conditions. The contributions here are two-fold. First, we demonstrate the feasibility of passively monitoring cognitive load in a realistic and complex situation (live piloting of an aircraft). In addition, the differences in performance and brain activity between the two experimental conditions underscore the need for ecologically-valid investigations
Brain-Machine Interface for Reaching: Accounting for Target Size, Multiple Motor Plans, and Bimanual Coordination
<p>Brain-machine interfaces (BMIs) offer the potential to assist millions of people worldwide suffering from immobility due to loss of limbs, paralysis, and neurodegenerative diseases. BMIs function by decoding neural activity from intact cortical brain regions in order to control external devices in real-time. While there has been exciting progress in the field over the past 15 years, the vast majority of the work has focused on restoring of motor function of a single limb. In the work presented in this thesis, I first investigate the expanded role of primary sensory (S1) and motor (M1) cortex during reaching movements. By varying target size during reaching movements, I discovered the cortical correlates of the speed-accuracy tradeoff known as Fitts' law. Similarly, I analyzed cortical motor processing during tasks where the motor plan is quickly reprogrammed. In each study, I found that parameters relevant to the reach, such as target size or alternative movement plans, could be extracted by neural decoders in addition to simple kinematic parameters such as velocity and position. As such, future BMI functionality could expand to account for relevant sensory information and reliably decode intended reach trajectories, even amidst transiently considered alternatives.</p><p> The second portion of my thesis work was the successful development of the first bimanual brain-machine interface. To reach this goal, I expanded the neural recordings system to enable bilateral, multi-site recordings from approximately 500 neurons simultaneously. In addition, I upgraded the experiment to feature a realistic virtual reality end effector, customized primate chair, and eye tracking system. Thirdly, I modified the tuning function of the unscented Kalman filter (UKF) to conjointly represent both arms in a single 4D model. As a result of widespread cortical plasticity in M1, S1, supplementary motor area (SMA), and posterior parietal cortex (PPC), the bimanual BMI enabled rhesus monkeys to simultaneously control two virtual limbs without any movement of their own body. I demonstrate the efficacy of the bimanual BMI in both a subject with prior task training using joysticks and a subject naïve to the task altogether, which simulates a common clinical scenario. The neural decoding algorithm was selected as a result of a methodical comparison between various neural decoders and decoder settings. I lastly introduce a two-stage switching model with a classify step and predict step which was designed and tested to generalize decoding strategies to include both unimanual and bimanual movements.</p>Dissertatio
Data-Driven Transducer Design and Identification for Internally-Paced Motor Brain Computer Interfaces: A Review
Brain-Computer Interfaces (BCIs) are systems that establish a direct communication pathway between the users' brain activity and external effectors. They offer the potential to improve the quality of life of motor-impaired patients. Motor BCIs aim to permit severely motor-impaired users to regain limb mobility by controlling orthoses or prostheses. In particular, motor BCI systems benefit patients if the decoded actions reflect the users' intentions with an accuracy that enables them to efficiently interact with their environment. One of the main challenges of BCI systems is to adapt the BCI's signal translation blocks to the user to reach a high decoding accuracy. This paper will review the literature of data-driven and user-specific transducer design and identification approaches and it focuses on internally-paced motor BCIs. In particular, continuous kinematic biomimetic and mental-task decoders are reviewed. Furthermore, static and dynamic decoding approaches, linear and non-linear decoding, offline and real-time identification algorithms are considered. The current progress and challenges related to the design of clinical-compatible motor BCI transducers are additionally discussed
Closing the Loop: Exploring the Use of Sacral Dorsal Root Ganglia Signals for Adaptive Neuromodulation of Bladder Function
Overactive bladder (OAB) is a highly prevalent condition which negatively affects the physical and mental health of millions of people worldwide. Sacral neuromodulation (SNM) is a third-line therapy that provides improved efficacy and less adherence issues as compared to conventional treatments. There have been ~300,000 SNM implants since the therapy was first introduced over 20 years ago. While SNM is delivered in an open-loop fashion, the therapy could have improved clinical efficacy by adopting a closed-loop stimulation paradigm that uses objective physiological feedback. One promising approach to obtain such feedback is by tapping into the nervous system that innervates the bladder. This dissertation focuses on using sacral level dorsal root ganglia (DRG) neural signals to provide sensory feedback for adaptive SNM a feline model.
This work began with exploring machine learning algorithms and feature selection methods for bladder pressure decoding in an offline analysis of DRG signals. A Kalman filter delivered the highest performance based on correlation coefficient between the pressure measurements and algorithm estimation. Additionally, firing rate normalization significantly contributed to lowering the normalized error, and a correlation coefficient-based channel selection method provided the lowest error compared to other channel selection methods.
Following algorithm optimization, this work implemented the optimized algorithm and feature selection method in real-time in anesthetized healthy bladder and simulated OAB feline models. A 0.88 ± 0.16 decoding correlation coefficient fit was achieved by the algorithm across 35 normal and simulated OAB bladder fill sequences in five experiments. Additionally, closed-loop neuromodulation was demonstrated using the estimated pressure to trigger pudendal nerve stimulation, which increased bladder capacity by 40% in two trials.
Finally, closed-loop SNM with the DRG sensory feedback algorithm was performed in anesthetized experiments. Our approach increased bladder capacity by 13.8% over no stimulation (p < 0.001). While there was no statistical difference in bladder capacity between closed-loop and continuous stimulation (p = 0.80), closed-loop stimulation reduced stimulation time by 57.7%. Interestingly, clearly-identified bladder single units had a reduced sensitivity during stimulation, suggesting a potential mechanism of SNM.
This dissertation also developed a method for chronic behavioral monitoring and neuromodulation of bladder function in a feline model. We tracked urodynamic parameters across multiple week testing intervals. We observed that animals could tolerate pudendal nerve stimulation above motor threshold. Interestingly, stimulation at 5 and 33 Hz appeared to have a modulatory effect on voiding interval and efficiency in line with prior work under anesthesia.
Overall, this work demonstrated that sacral level DRG are a viable sensory feedback target for adaptive SNM. This dissertation also investigated a behavioral paradigm that will be useful for system validation in awake and chronic experiments. Behavioral experiments such as these, as well as development of low-power systems for adaptive monitoring and feedback, are a crucial step prior to clinical translation of this method. Ultimately, implementation of closed-loop adaptive SNM will lead to an improved therapy and greater potential benefit for the millions of individuals with OAB.PHDBiomedical EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/166129/1/aileenou_1.pd
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Algorithm and Hardware Co-Design for Local/Edge Computing
Advances in VLSI manufacturing and design technology over the decades have created many computing paradigms for disparate computing needs. With concerns for transmission cost, security, latency of centralized computing, edge/local computing are increasingly prevalent in the faster growing sectors like Internet-of-Things (IoT) and other sectors that require energy/connectivity autonomous systems such as biomedical and industrial applications.
Energy and power efficient are the main design constraints in local and edge computing. While there exists a wide range of low power design techniques, they are often underutilized in custom circuit designs as the algorithms are developed independent of the hardware. Such compartmentalized design approach fails to take advantage of the many compatible algorithmic and hardware techniques that can improve the efficiency of the entire system. Algorithm hardware co-design is to explore the design space with whole stack awareness.
The main goal of the algorithm hardware co-design methodology is the enablement and improvement of small form factor edge and local VLSI systems operating under strict constraints of area and energy efficiency. This thesis presents selected works of application specific digital and mixed-signal integrated circuit designs. The application space ranges from implantable biomedical devices to edge machine learning acceleration
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3D motion : encoding and perception
The visual system supports perception and inferences about events in a dynamic, three-dimensional (3D) world. While remarkable progress has been made in the study of visual information processing, the existing paradigms for examining visual perception and its relation to neural activity often fail to generalize to perception in the real world which has complex dynamics and 3D spatial structure. This thesis focuses on the case of 3D motion, developing dynamic tasks for studying visual perception and constructing a neural coding framework to relate neural activity to perception in a 3D environment.
First, I introduce target-tracking as a psychophysical method and develop an analysis framework based on state space models and the Kalman filter. I demonstrate that target-tracking in conjunction with a Kalman filter analysis framework produce estimates of visual sensitivity that are comparable to those obtained with a traditional forced-choice task and a signal detection theory analysis. Next, I use the target-tracking paradigm in a series of experiments examining 3D motion perception, specifically comparing the perception of frontoparallel motion with the perception of motion-through-depth. I find that continuous tracking of motion-through-depth is selectively impaired due to the relatively small retinal projections resulting from motion-through-depth and the slower processing of binocular disparities.
The thesis then turns the neural representation of 3D motion and how that underlies perception. First I introduce a theoretical framework that extends the standard neural coding approach, incorporating the environment-to-retina transformation. Neural coding typically treats the visuals stimulus as a direct proxy for the pattern of stimulation that falls on the retina. Incorporating the environment-to-retina transformation results in a neural representation fundamentally shaped by the projective geometry of the world onto the retina. This model explains substantial anomalies in existing neurophysiological recordings in primate visual cortical neurons during presentations of 3D motion and in psychophysical studies of human perception. In a series of psychophysical experiments, I systematically examine the predictions of the model for human perception by observing how perceptual performance changes as a function of viewing distance and eccentricity. Performance in these experiments suggests a reliance on a neural representation similar to the one described by the model.
Taken together, the experimental and theoretical findings reported here advance the understanding of the neural representation and perception of the dynamic 3D world, and adds to the behavioral tools available to vision scientists.Neuroscienc
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