Finding the right answer: an information retrieval approach supporting knowledge sharing

Knowledge Management can be defined as the effective strategies to get the right piece of knowledge to the right person in the right time. Having the main purpose of providing users with information items of their interest, recommender systems seem to be quite valuable for organizational knowledge management environments. Here we present KARe (Knowledgeable Agent for Recommendations), a multiagent recommender system that supports users sharing knowledge in a peer-to-peer environment. Central to this work is the assumption that social interaction is essential for the creation and dissemination of new knowledge. Supporting social interaction, KARe allows users to share knowledge through questions and answers. This paper describes KARe�s agent-oriented architecture and presents its recommendation algorithm

Retrieval and Registration of Long-Range Overlapping Frames for Scalable Mosaicking of In Vivo Fetoscopy

Purpose: The standard clinical treatment of Twin-to-Twin Transfusion Syndrome consists in the photo-coagulation of undesired anastomoses located on the placenta which are responsible to a blood transfer between the two twins. While being the standard of care procedure, fetoscopy suffers from a limited field-of-view of the placenta resulting in missed anastomoses. To facilitate the task of the clinician, building a global map of the placenta providing a larger overview of the vascular network is highly desired. Methods: To overcome the challenging visual conditions inherent to in vivo sequences (low contrast, obstructions or presence of artifacts, among others), we propose the following contributions: (i) robust pairwise registration is achieved by aligning the orientation of the image gradients, and (ii) difficulties regarding long-range consistency (e.g. due to the presence of outliers) is tackled via a bag-of-word strategy, which identifies overlapping frames of the sequence to be registered regardless of their respective location in time. Results: In addition to visual difficulties, in vivo sequences are characterised by the intrinsic absence of gold standard. We present mosaics motivating qualitatively our methodological choices and demonstrating their promising aspect. We also demonstrate semi-quantitatively, via visual inspection of registration results, the efficacy of our registration approach in comparison to two standard baselines. Conclusion: This paper proposes the first approach for the construction of mosaics of placenta in in vivo fetoscopy sequences. Robustness to visual challenges during registration and long-range temporal consistency are proposed, offering first positive results on in vivo data for which standard mosaicking techniques are not applicable.Comment: Accepted for publication in International Journal of Computer Assisted Radiology and Surgery (IJCARS

Minimization of Retrieval Time During Software Reuse

Software reuse refers to the development of software using existing software. Reuse of software can help reduce software development time and overall cost. Retrieval of relevant software from the repository during software reuse can be time consuming if the repository contains many projects, and/or the retrieval process is computationally expensive. This paper describes pre-filtering, which is a method of minimizing retrieval time during software reuse. Pre-filtering can be applied while reusing object-oriented software, whose requirement specifications contain Unified Modelling Language (UML) diagrams. Pre-filtering involves quickly identifying a subset of repository projects which are potentially similar to a query model. The candidate projects are subsequently compared with the query during retrieval to determine their actual degree of similarity to the query. The query and repository projects are represented by n-dimensional feature vectors, where each feature is a metric which provides a quantitative measure of properties of a software project. Experimental results show that the proposed technique leads to a significant reduction in retrieval time, even though it causes a slight decrease in mean average precision.http://dx.doi.org/10.4314/njt.v34i2.2

Efficient Information Retrieval for Software Bug Localization

Software systems are often shipped with defects. When a bug is reported, developers use the information available in the associated report to locate source code fragments that need to be modified to fix the bug. However, as software systems evolve in size and complexity, bug localization can become a tedious and time-consuming process. Contemporary bug localization tools utilize Information Retrieval (IR) methods for automated support to minimize the manual effort. IR methods exploit the textual content of bug reports to capture and rank relevant buggy source files. However, for an IR-based bug localization tool to be useful, it must achieve adequate retrieval accuracy. Lower precision and recall can leave developers with large amounts of incorrect information to wade through. Motivated by these observations, in this dissertation, we propose a new paradigm of information-theoretic IR methods to support bug localization tasks in software systems. These methods exploit the co-occurrence patterns of code terms in software systems to reveal latent semantic information that other methods often fail to capture. We further investigate the impact of combining various IR methods on the retrieval accuracy of bug localization engines. The main assumption is that different IR methods, targeting different dimensions of similarity between software artifacts, can enhance the confidence in each other\u27s results. Furthermore, we propose a novel approach for enhancing the performance of IR-enabled bug localization methods in the context of Open-Source Software (OSS). The proposed approach exploits knowledge from previously resolved bugs to help localize new bugs. Our analysis uses multiple datasets generated for multiple open-source and closed source projects. Our results show that a) information-theoretic IR methods can significantly outperform classical IR methods in bug localization tasks, b) optimized IR-hybrids can significantly outperform individual IR methods, and near-optimal global configurations can be determined for different combinations of IR methods, and c) information extracted from previously resolved bug reports can significantly enhance the accuracy of IR-enabled bug localization methods in OSS

On the Reverse Engineering of the Citadel Botnet

Citadel is an advanced information-stealing malware which targets financial information. This malware poses a real threat against the confidentiality and integrity of personal and business data. A joint operation was recently conducted by the FBI and the Microsoft Digital Crimes Unit in order to take down Citadel command-and-control servers. The operation caused some disruption in the botnet but has not stopped it completely. Due to the complex structure and advanced anti-reverse engineering techniques, the Citadel malware analysis process is both challenging and time-consuming. This allows cyber criminals to carry on with their attacks while the analysis is still in progress. In this paper, we present the results of the Citadel reverse engineering and provide additional insight into the functionality, inner workings, and open source components of the malware. In order to accelerate the reverse engineering process, we propose a clone-based analysis methodology. Citadel is an offspring of a previously analyzed malware called Zeus; thus, using the former as a reference, we can measure and quantify the similarities and differences of the new variant. Two types of code analysis techniques are provided in the methodology, namely assembly to source code matching and binary clone detection. The methodology can help reduce the number of functions requiring manual analysis. The analysis results prove that the approach is promising in Citadel malware analysis. Furthermore, the same approach is applicable to similar malware analysis scenarios.Comment: 10 pages, 17 figures. This is an updated / edited version of a paper appeared in FPS 201

Automatic annotation of bioinformatics workflows with biomedical ontologies

Legacy scientific workflows, and the services within them, often present scarce and unstructured (i.e. textual) descriptions. This makes it difficult to find, share and reuse them, thus dramatically reducing their value to the community. This paper presents an approach to annotating workflows and their subcomponents with ontology terms, in an attempt to describe these artifacts in a structured way. Despite a dearth of even textual descriptions, we automatically annotated 530 myExperiment bioinformatics-related workflows, including more than 2600 workflow-associated services, with relevant ontological terms. Quantitative evaluation of the Information Content of these terms suggests that, in cases where annotation was possible at all, the annotation quality was comparable to manually curated bioinformatics resources.Comment: 6th International Symposium on Leveraging Applications (ISoLA 2014 conference), 15 pages, 4 figure