Automatic registration of 3D models to laparoscopic video images for guidance during liver surgery

Laparoscopic liver interventions offer significant advantages over open surgery, such as less pain and trauma, and shorter recovery time for the patient. However, they also bring challenges for the surgeons such as the lack of tactile feedback, limited field of view and occluded anatomy. Augmented reality (AR) can potentially help during laparoscopic liver interventions by displaying sub-surface structures (such as tumours or vasculature). The initial registration between the 3D model extracted from the CT scan and the laparoscopic video feed is essential for an AR system which should be efficient, robust, intuitive to use and with minimal disruption to the surgical procedure. Several challenges of registration methods in laparoscopic interventions include the deformation of the liver due to gas insufflation in the abdomen, partial visibility of the organ and lack of prominent geometrical or texture-wise landmarks. These challenges are discussed in detail and an overview of the state of the art is provided. This research project aims to provide the tools to move towards a completely automatic registration. Firstly, the importance of pre-operative planning is discussed along with the characteristics of the liver that can be used in order to constrain a registration method. Secondly, maximising the amount of information obtained before the surgery, a semi-automatic surface based method is proposed to recover the initial rigid registration irrespective of the position of the shapes. Finally, a fully automatic 3D-2D rigid global registration is proposed which estimates a global alignment of the pre-operative 3D model using a single intra-operative image. Moving towards incorporating the different liver contours can help constrain the registration, especially for partial surfaces. Having a robust, efficient AR system which requires no manual interaction from the surgeon will aid in the translation of such approaches to the clinics

Fluoroscopy-based tracking of femoral kinematics with statistical shape models

Precise knee kinematics assessment helps to diagnose knee pathologies and to improve the design of customized prosthetic components. The first step in identifying knee kinematics is to assess the femoral motion in the anatomical frame. However, no work has been done on pathological femurs, whose shape can be highly different from healthy ones

Reconstruction of Patient-Specific Bone Models from X-Ray Radiography

The availability of a patient‐specific bone model has become an increasingly invaluable addition to orthopedic case evaluation and planning [1]. Utilized within a wide range of specialized visualization and analysis tools, such models provide unprecedented wealth of bone shape information previously unattainable using traditional radiographic imaging [2]. In this work, a novel bone reconstruction method from two or more x‐ray images is described. This method is superior to previous attempts in terms of accuracy and repeatability. The new technique accurately models the radiological scene in a way that eliminates the need for expensive multi‐planar radiographic imaging systems. It is also flexible enough to allow for both short and long film imaging using standard radiological protocols, which makes the technology easily utilized in standard clinical setups

AN AUTOMATED, DEEP LEARNING APPROACH TO SYSTEMATICALLY & SEQUENTIALLY DERIVE THREE-DIMENSIONAL KNEE KINEMATICS DIRECTLY FROM TWO-DIMENSIONAL FLUOROSCOPIC VIDEO

Total knee arthroplasty (TKA), also known as total knee replacement, is a surgical procedure to replace damaged parts of the knee joint with artificial components. It aims to relieve pain and improve knee function. TKA can improve knee kinematics and reduce pain, but it may also cause altered joint mechanics and complications. Proper patient selection, implant design, and surgical technique are important for successful outcomes. Kinematics analysis plays a vital role in TKA by evaluating knee joint movement and mechanics. It helps assess surgery success, guides implant and technique selection, informs implant design improvements, detects problems early, and improves patient outcomes. However, evaluating the kinematics of patients using conventional approaches presents significant challenges. The reliance on 3D CAD models limits applicability, as not all patients have access to such models. Moreover, the manual and time-consuming nature of the process makes it impractical for timely evaluations. Furthermore, the evaluation is confined to laboratory settings, limiting its feasibility in various locations. This study aims to address these limitations by introducing a new methodology for analyzing in vivo 3D kinematics using an automated deep learning approach. The proposed methodology involves several steps, starting with image segmentation of the femur and tibia using a robust deep learning approach. Subsequently, 3D reconstruction of the implants is performed, followed by automated registration. Finally, efficient knee kinematics modeling is conducted. The final kinematics results showed potential for reducing workload and increasing efficiency. The algorithms demonstrated high speed and accuracy, which could enable real-time TKA kinematics analysis in the operating room or clinical settings. Unlike previous studies that relied on sponsorships and limited patient samples, this algorithm allows the analysis of any patient, anywhere, and at any time, accommodating larger subject populations and complete fluoroscopic sequences. Although further improvements can be made, the study showcases the potential of machine learning to expand access to TKA analysis tools and advance biomedical engineering applications

Automatic 3D human modeling: an initial stage towards 2-way inside interaction in mixed reality

3D human models play an important role in computer graphics applications from a wide range of domains, including education, entertainment, medical care simulation and military training. In many situations, we want the 3D model to have a visual appearance that matches that of a specific living person and to be able to be controlled by that person in a natural manner. Among other uses, this approach supports the notion of human surrogacy, where the virtual counterpart provides a remote presence for the human who controls the virtual character\u27s behavior. In this dissertation, a human modeling pipeline is proposed for the problem of creating a 3D digital model of a real person. Our solution involves reshaping a 3D human template with a 2D contour of the participant and then mapping the captured texture of that person to the generated mesh. Our method produces an initial contour of a participant by extracting the user image from a natural background. One particularly novel contribution in our approach is the manner in which we improve the initial vertex estimate. We do so through a variant of the ShortStraw corner-finding algorithm commonly used in sketch-based systems. Here, we develop improvements to ShortStraw, presenting an algorithm called IStraw, and then introduce adaptations of this improved version to create a corner-based contour segmentatiuon algorithm. This algorithm provides significant improvements on contour matching over previously developed systems, and does so with low computational complexity. The system presented here advances the state of the art in the following aspects. First, the human modeling process is triggered automatically by matching the participant\u27s pose with an initial pose through a tracking device and software. In our case, the pose capture and skeletal model are provided by the Microsoft Kinect and its associated SDK. Second, color image, depth data, and human tracking information from the Kinect and its SDK are used to automatically extract the contour of the participant and then generate a 3D human model with skeleton. Third, using the pose and the skeletal model, we segment the contour into eight parts and then match the contour points on each segment to a corresponding anchor set associated with a 3D human template. Finally, we map the color image of the person to the 3D model as its corresponding texture map. The whole modeling process only take several seconds and the resulting human model looks like the real person. The geometry of the 3D model matches the contour of the real person, and the model has a photorealistic texture. Furthermore, the mesh of the human model is attached to the skeleton provided in the template, so the model can support programmed animations or be controlled by real people. This human control is commonly done through a literal mapping (motion capture) or a gesture-based puppetry system. Our ultimate goal is to create a mixed reality (MR) system, in which the participants can manipulate virtual objects, and in which these virtual objects can affect the participant, e.g., by restricting their mobility. This MR system prototype design motivated the work of this dissertation, since a realistic 3D human model of the participant is an essential part of implementing this vision

Multi-modal video analysis for early fire detection

In dit proefschrift worden verschillende aspecten van een intelligent videogebaseerd branddetectiesysteem onderzocht. In een eerste luik ligt de nadruk op de multimodale verwerking van visuele, infrarood en time-of-flight videobeelden, die de louter visuele detectie verbetert. Om de verwerkingskost zo minimaal mogelijk te houden, met het oog op real-time detectie, is er voor elk van het type sensoren een set ’low-cost’ brandkarakteristieken geselecteerd die vuur en vlammen uniek beschrijven. Door het samenvoegen van de verschillende typen informatie kunnen het aantal gemiste detecties en valse alarmen worden gereduceerd, wat resulteert in een significante verbetering van videogebaseerde branddetectie. Om de multimodale detectieresultaten te kunnen combineren, dienen de multimodale beelden wel geregistreerd (~gealigneerd) te zijn. Het tweede luik van dit proefschrift focust zich hoofdzakelijk op dit samenvoegen van multimodale data en behandelt een nieuwe silhouet gebaseerde registratiemethode. In het derde en tevens laatste luik van dit proefschrift worden methodes voorgesteld om videogebaseerde brandanalyse, en in een latere fase ook brandmodellering, uit te voeren. Elk van de voorgestelde technieken voor multimodale detectie en multi-view lokalisatie zijn uitvoerig getest in de praktijk. Zo werden onder andere succesvolle testen uitgevoerd voor de vroegtijdige detectie van wagenbranden in ondergrondse parkeergarages

3D Object Reconstruction using Multi-View Calibrated Images

In this study, two models are proposed, one is a visual hull model and another one is a 3D object reconstruction model. The proposed visual hull model, which is based on bounding edge representation, obtains high time performance which makes it to be one of the best methods. The main contribution of the proposed visual hull model is to provide bounding surfaces over the bounding edges, which results a complete triangular surface mesh. Moreover, the proposed visual hull model can be computed over the camera networks distributedly. The second model is a depth map based 3D object reconstruction model which results a watertight triangular surface mesh. The proposed model produces the result with acceptable accuracy as well as high completeness, only using stereo matching and triangulation. The contribution of this model is to playing with the 3D points to find the best reliable ones and fitting a surface over them

Vision-based techniques for gait recognition

Global security concerns have raised a proliferation of video surveillance devices. Intelligent surveillance systems seek to discover possible threats automatically and raise alerts. Being able to identify the surveyed object can help determine its threat level. The current generation of devices provide digital video data to be analysed for time varying features to assist in the identification process. Commonly, people queue up to access a facility and approach a video camera in full frontal view. In this environment, a variety of biometrics are available - for example, gait which includes temporal features like stride period. Gait can be measured unobtrusively at a distance. The video data will also include face features, which are short-range biometrics. In this way, one can combine biometrics naturally using one set of data. In this paper we survey current techniques of gait recognition and modelling with the environment in which the research was conducted. We also discuss in detail the issues arising from deriving gait data, such as perspective and occlusion effects, together with the associated computer vision challenges of reliable tracking of human movement. Then, after highlighting these issues and challenges related to gait processing, we proceed to discuss the frameworks combining gait with other biometrics. We then provide motivations for a novel paradigm in biometrics-based human recognition, i.e. the use of the fronto-normal view of gait as a far-range biometrics combined with biometrics operating at a near distance

Markerless deformation capture of hoverfly wings using multiple calibrated cameras

This thesis introduces an algorithm for the automated deformation capture of hoverfly wings from multiple camera image sequences. The algorithm is capable of extracting dense surface measurements, without the aid of fiducial markers, over an arbitrary number of wingbeats of hovering flight and requires limited manual initialisation. A novel motion prediction method, called the ‘normalised stroke model’, makes use of the similarity of adjacent wing strokes to predict wing keypoint locations, which are then iteratively refined in a stereo image registration procedure. Outlier removal, wing fitting and further refinement using independently reconstructed boundary points complete the algorithm. It was tested on two hovering data sets, as well as a challenging flight manoeuvre. By comparing the 3-d positions of keypoints extracted from these surfaces with those resulting from manual identification, the accuracy of the algorithm is shown to approach that of a fully manual approach. In particular, half of the algorithm-extracted keypoints were within 0.17mm of manually identified keypoints, approximately equal to the error of the manual identification process. This algorithm is unique among purely image based flapping flight studies in the level of automation it achieves, and its generality would make it applicable to wing tracking of other insects