Job Interactivity Using a Steering Service in an Interactive Grid Analysis Environment

Grid computing has been dominated by the execution of batch jobs. Interactive data analysis is a new domain in the area of grid job execution. The Grid-Enabled Analysis Environment (GAE) attempts to address this in HEP grids by the use of a Steering Service. This service will provide physicists with the continuous feedback of their jobs and will provide them with the ability to control and steer the execution of their submitted jobs. It will enable them to move their jobs to different grid nodes when desired. The Steering Service will also act autonomously to make steering decisions on behalf of the user, attempting to optimize the execution of the job. This service will also ensure the optimal consumption of the Grid user's resource quota. The Steering Service will provide a web service interface defined by standard WSDL. In this paper we have discussed how the Steering Service will facilitate interactive remote analysis of data generated in Interactive Grid Analysis Environment

'BioNessie(G) - a grid enabled biochemical networks simulation environment

The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms. BioNessie is a biochemical network simulator which has been developed at the University of Glasgow. This paper describes the simulator and focuses in particular on how it has been extended to benefit from a wide variety of high performance compute resources across the UK through Grid technologies to support larger scale simulations

BioNessie - a grid enabled biochemical networks simulation environment

The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms. BioNessie is a biochemical network simulator which has been developed at the University of Glasgow. This paper describes the simulator and focuses in particular on how it has been extended to benefit from a wide variety of high performance compute resources across the UK through Grid technologies to support larger scale simulations

Interactive tag maps and tag clouds for the multiscale exploration of large spatio-temporal datasets

'Tag clouds' and 'tag maps' are introduced to represent geographically referenced text. In combination, these aspatial and spatial views are used to explore a large structured spatio-temporal data set by providing overviews and filtering by text and geography. Prototypes are implemented using freely available technologies including Google Earth and Yahoo! 's Tag Map applet. The interactive tag map and tag cloud techniques and the rapid prototyping method used are informally evaluated through successes and limitations encountered. Preliminary evaluation suggests that the techniques may be useful for generating insights when visualizing large data sets containing geo-referenced text strings. The rapid prototyping approach enabled the technique to be developed and evaluated, leading to geovisualization through which a number of ideas were generated. Limitations of this approach are reflected upon. Tag placement, generalisation and prominence at different scales are issues which have come to light in this study that warrant further work

VM-MAD: a cloud/cluster software for service-oriented academic environments

The availability of powerful computing hardware in IaaS clouds makes cloud computing attractive also for computational workloads that were up to now almost exclusively run on HPC clusters. In this paper we present the VM-MAD Orchestrator software: an open source framework for cloudbursting Linux-based HPC clusters into IaaS clouds but also computational grids. The Orchestrator is completely modular, allowing flexible configurations of cloudbursting policies. It can be used with any batch system or cloud infrastructure, dynamically extending the cluster when needed. A distinctive feature of our framework is that the policies can be tested and tuned in a simulation mode based on historical or synthetic cluster accounting data. In the paper we also describe how the VM-MAD Orchestrator was used in a production environment at the FGCZ to speed up the analysis of mass spectrometry-based protein data by cloudbursting to the Amazon EC2. The advantages of this hybrid system are shown with a large evaluation run using about hundred large EC2 nodes.Comment: 16 pages, 5 figures. Accepted at the International Supercomputing Conference ISC13, June 17--20 Leipzig, German

Deploying Web-based Visual Exploration Tools on the Grid

We discuss a web-based portal for the exploration, encapsulation, and dissemination of visualization results over the Grid. This portal integrates three components: an interface client for structured visualization exploration, a visualization web application to manage the generation and capture of the visualization results, and a centralized portal application server to access and manage grid resources. Our approach uses standard web technologies to make the system accessible with minimal user setup. We demonstrate the usefulness of the developed system using an example for Adaptive Mesh Refinement (AMR) data visualization

Collaboration in the Semantic Grid: a Basis for e-Learning

The CoAKTinG project aims to advance the state of the art in collaborative mediated spaces for the Semantic Grid. This paper presents an overview of the hypertext and knowledge based tools which have been deployed to augment existing collaborative environments, and the ontology which is used to exchange structure, promote enhanced process tracking, and aid navigation of resources before, after, and while a collaboration occurs. While the primary focus of the project has been supporting e-Science, this paper also explores the similarities and application of CoAKTinG technologies as part of a human-centred design approach to e-Learning