Modular System for Shelves and Coasts (MOSSCO v1.0) - a flexible and multi-component framework for coupled coastal ocean ecosystem modelling

Shelf and coastal sea processes extend from the atmosphere through the water column and into the sea bed. These processes are driven by physical, chemical, and biological interactions at local scales, and they are influenced by transport and cross strong spatial gradients. The linkages between domains and many different processes are not adequately described in current model systems. Their limited integration level in part reflects lacking modularity and flexibility; this shortcoming hinders the exchange of data and model components and has historically imposed supremacy of specific physical driver models. We here present the Modular System for Shelves and Coasts (MOSSCO, http://www.mossco.de), a novel domain and process coupling system tailored---but not limited--- to the coupling challenges of and applications in the coastal ocean. MOSSCO builds on the existing coupling technology Earth System Modeling Framework and on the Framework for Aquatic Biogeochemical Models, thereby creating a unique level of modularity in both domain and process coupling; the new framework adds rich metadata, flexible scheduling, configurations that allow several tens of models to be coupled, and tested setups for coastal coupled applications. That way, MOSSCO addresses the technology needs of a growing marine coastal Earth System community that encompasses very different disciplines, numerical tools, and research questions.Comment: 30 pages, 6 figures, submitted to Geoscientific Model Development Discussion

An acoustic view of ocean mixing

Knowledge of the parameter K (turbulent diffusivity/"mixing intensity") is a key to understand transport processes of matter and energy in the ocean. Especially the almost vertical component of K across the ocean stratification (diapycnal diffusivity) is vital for research on biogeochemical cycles or greenhouse gas budgets. Recent boost in precision of water velocity data that can be obtained from vessel-mounted acoustic instruments (vmADCP) allows identifying ocean regions of elevated diapycnal diffusivity during research cruises - in high horizontal resolution and without extra ship time needed. This contribution relates acoustic data from two cruises in the Tropical North East Atlantic Oxygen Minimum Zone to simultaneous field observations of diapycnal diffusivity: pointwise measurements by a microstructure profiler as well as one integrative value from a large scale Tracer Release Experiment

Modeling eutrophication and oligotrophication of shallow-water marine systems: the importance of sediments under stratified and well-mixed conditions

A one-dimensional model that couples water-column physics with pelagic and benthic biogeochemistry in a 50-m-deep water column is used to demonstrate the importance of the sediment in the functioning of shallow systems, the eutrophication status of the system, and the system’s resilience to oligotrophication. Two physical scenarios, a well-mixed and a stratified water column, are considered and both are run along a gradient of increasing initial pelagic-dissolved inorganic nitrogen (DIN) concentration. Where the mixed layer extends to the bottom, more nutrients and less light are available for growth. Under low to moderately eutrophic conditions (pelagic DIN <30 mmol m−3), this leads to higher productivity in well-mixed waters, while the stratified system is more productive under highly eutrophic conditions. Under stratification, the build-up of nitrate and depletion of oxygen below the mixed layer does not notably change the functioning of the sediment as a sink for reactive nitrogen. In sediments underlying well-mixed waters, sedimentary denitrification, fueled mainly by in situ nitrification, is slightly more important (8–15% of total benthic mineralization) than under stratified waters (7–20%), where the influx of bottom-water nitrate is the most important nitrate source. As a consequence of this less efficient removal of reactive nitrogen, the winter DIN concentrations are higher in the stratified scenario. The model is used to estimate the long-term benefits of nutrient reduction scenarios and the timeframe under which the new steady-state condition is approached. It is shown that a 50% reduction in external nitrogen inputs ultimately results in a reduction of 60–70% of the original pelagic DIN concentration. However, as the efflux of nitrogen from the sediment compensates part of the losses in the water column, system oligotrophication is a slow process: after 20 years of reduced inputs, the pelagic DIN concentrations still remain 2.7 mmol m−3 (mixed) and 3.9 mmol m−3 (stratified) above the ultimate DIN concentrations.

Integrating biogeochemistry and ecology into ocean data assimilation systems

Monitoring and predicting the biogeochemical state of the ocean and marine ecosystems is an important application of operational oceanography that needs to be expanded. The accurate depiction of the ocean's physical environment enabled by Global Ocean Data Assimilation Experiment (GODAE) systems, in both real-time and reanalysis modes, is already valuable for various for various applications, such as the fishing industry and fisheries management. However, most of these applications require accurate estimates of both physical and biogeochemical ocean conditions over a wide range of spatial and temporal scales. In this paper, we discuss recent developments that enable coupling new biogeochemical models and assimilation components with the existing GODAE systems, and we examine the potential of such systems in several areas of interest: phytoplankton biomass monitoring in the open ocean, ocean carbon cycle monitoring and assessment, marine ecosystem management at seasonal and longer time scales, and downscaling in coastal areas. A number of key requirements and research priorities are then identified for the future, GODAE systems will need to improve their representation of physical variables that are not yet considered essential, such as upper-ocean vertical fluxes that are critically important to biological activity. Further, the observing systems will need to be expanded in terms of in situ platforms (with intensified deployments of sensors for O-2 and chlorophyll, and inclusion of new sensors for nutrients, zooplankton, micronekton biomass, and others), satellite missions (e.g., hyperspectral instruments for ocean color, lidar systems for mixed-layer depths, and wide-swath altimeters for coastal sea level), and improved methods to assimilate these new measurements

Challenges in integrative approaches to modelling the marine ecosystems of the North Atlantic: Physics to Fish and Coasts to Ocean

It has long been recognized that there are strong interactions and feedbacks between climate, upper ocean biogeochemistry and marine food webs, and also that food web structure and phytoplankton community distribution are important determinants of variability in carbon production and export from the euphotic zone. Numerical models provide a vital tool to explore these interactions, given their capability to investigate multiple connected components of the system and the sensitivity to multiple drivers, including potential future conditions. A major driver for ecosystem model development is the demand for quantitative tools to support ecosystem-based management initiatives. The purpose of this paper is to review approaches to the modelling of marine ecosystems with a focus on the North Atlantic Ocean and its adjacent shelf seas, and to highlight the challenges they face and suggest ways forward. We consider the state of the art in simulating oceans and shelf sea physics, planktonic and higher trophic level ecosystems, and look towards building an integrative approach with these existing tools. We note how the different approaches have evolved historically and that many of the previous obstacles to harmonisation may no longer be present. We illustrate this with examples from the on-going and planned modelling effort in the Integrative Modelling work package of the EURO-BASIN programme

PICES Press, Vol. 18, No. 2, Summer 2010

•The 2010 Inter-sessional Science Board Meeting: A Note from the Science Board Chairman (pp. 1-3) •2010 Symposium on “Effects of Climate Change on Fish and Fisheries” (pp. 4-11) •2009 Mechanism of North Pacific Low Frequency Variability Workshop (pp. 12-14) •The Fourth China-Japan-Korea GLOBEC/IMBER Symposium (pp. 15-17, 23) •2010 Sendai Ocean Acidification Workshop (pp. 18-19, 31) •2010 Sendai Coupled Climate-to-Fish-to-Fishers Models Workshop (pp. 20-21) •2010 Sendai Salmon Workshop on Climate Change (pp. 22-23) •2010 Sendai Zooplankton Workshop (pp. 24-25, 28) •2010 Sendai Workshop on “Networking across Global Marine Hotspots” (pp. 26-28) •The Ocean, Salmon, Ecology and Forecasting in 2010 (pp. 29, 44) •The State of the Northeast Pacific during the Winter of 2009/2010 (pp. 30-31) •The State of the Western North Pacific in the Second Half of 2009 (pp. 32-33) •The Bering Sea: Current Status and Recent Events (pp. 34-35, 39) •PICES Seafood Safety Project: Guatemala Training Program (pp. 36-39) •The Pacific Ocean Boundary Ecosystem and Climate Study (POBEX) (pp. 40-43) •PICES Calendar (p. 44

Report on the Kick-off workshop of the Network of Experts for ReDeveloping Models of the European Marine Environment

The ‘Kick-off workshop of the Network of Experts for ReDeveloping Models of the European Marine Environment. Eutrophication modelling and Descriptor 5 of the Marine Strategy Framework Directive’ was held on 20-21 January 2016 in Brussels, Belgium, jointly organized by DG Environment and DG JRC (IES –Water Resources Unit) within the framework of the Administrative Arrangement NoENV.C.2/2015/070201/705766 (Deliverable 2.2) and the Marine Strategy Framework Directive (MFSD). The aim of this workshop was to learn about existing modelling work and to draw lessons for the build-up of the European modelling effort. In this context, the workshop consisted of 18 presentations on the use of marine ecosystem models to address indicators within the Eutrophication descriptor (D5) of the MFSD in coastal zones and European regional seas, including assessment, indicator development and scenario building. Some other descriptors were also covered by the presentations and discussions. The presentations dealt with (1) South European regional seas (Black and Mediterranean Seas), (2) Atlantic shelf areas, (3) North Sea and Baltic Sea and (4) General lectures. The workshop also served as the inception meeting of the newly created informal network of experts on the Modelling of the European Marine Environment (MEME). The participants were invited to join the network DG Environment and DG JRC emphasizing the added value of a joint effort to further develop modelling capabilities with the objective of providing useful advice for policy makers. This was well received by the attendants. This report summarizes the workshop and provides further detail on the presentations, discussion and conclusions.JRC.H.1-Water Resource

IMBER – Research for marine sustainability: Synthesis and the way forward

The Integrated Marine Biogeochemistry and Ecosystem Research (IMBER) project aims at developing a comprehensive understanding of and accurate predictive capacity of ocean responses to accelerating global change and the consequent effects on the Earth system and human society. Understanding the changing ecology and biogeochemistry of marine ecosystems and their sensitivity and resilience to multiple drivers, pressures and stressors is critical to developing responses that will help reduce the vulnerability of marine-dependent human communities. This overview of the IMBER project provides a synthesis of project achievements and highlights the value of collaborative, interdisciplinary, integrated research approaches as developed and implemented through IMBER regional programs, working groups, project-wide activities, national contributions, and external partnerships. A perspective is provided on the way forward for the next 10 years of the IMBER project as the global environmental change research landscape evolves and as new areas of marine research emerge. IMBER science aims to foster collaborative, interdisciplinary and integrated research that addresses key ocean and social science issues and provides the understanding needed to propose innovative societal responses to changing marine systems