Pipelining Saturated Accumulation

Aggressive pipelining and spatial parallelism allow integrated circuits (e.g., custom VLSI, ASICs, and FPGAs) to achieve high throughput on many Digital Signal Processing applications. However, cyclic data dependencies in the computation can limit parallelism and reduce the efficiency and speed of an implementation. Saturated accumulation is an important example where such a cycle limits the throughput of signal processing applications. We show how to reformulate saturated addition as an associative operation so that we can use a parallel-prefix calculation to perform saturated accumulation at any data rate supported by the device. This allows us, for example, to design a 16-bit saturated accumulator which can operate at 280 MHz on a Xilinx Spartan-3(XC3S-5000-4) FPGA, the maximum frequency supported by the component's DCM

Energy-Efficient Digital Circuit Design using Threshold Logic Gates

abstract: Improving energy efficiency has always been the prime objective of the custom and automated digital circuit design techniques. As a result, a multitude of methods to reduce power without sacrificing performance have been proposed. However, as the field of design automation has matured over the last few decades, there have been no new automated design techniques, that can provide considerable improvements in circuit power, leakage and area. Although emerging nano-devices are expected to replace the existing MOSFET devices, they are far from being as mature as semiconductor devices and their full potential and promises are many years away from being practical. The research described in this dissertation consists of four main parts. First is a new circuit architecture of a differential threshold logic flipflop called PNAND. The PNAND gate is an edge-triggered multi-input sequential cell whose next state function is a threshold function of its inputs. Second a new approach, called hybridization, that replaces flipflops and parts of their logic cones with PNAND cells is described. The resulting \hybrid circuit, which consists of conventional logic cells and PNANDs, is shown to have significantly less power consumption, smaller area, less standby power and less power variation. Third, a new architecture of a field programmable array, called field programmable threshold logic array (FPTLA), in which the standard lookup table (LUT) is replaced by a PNAND is described. The FPTLA is shown to have as much as 50% lower energy-delay product compared to conventional FPGA using well known FPGA modeling tool called VPR. Fourth, a novel clock skewing technique that makes use of the completion detection feature of the differential mode flipflops is described. This clock skewing method improves the area and power of the ASIC circuits by increasing slack on timing paths. An additional advantage of this method is the elimination of hold time violation on given short paths. Several circuit design methodologies such as retiming and asynchronous circuit design can use the proposed threshold logic gate effectively. Therefore, the use of threshold logic flipflops in conventional design methodologies opens new avenues of research towards more energy-efficient circuits.Dissertation/ThesisDoctoral Dissertation Computer Science 201

Anti-Tamper Method for Field Programmable Gate Arrays Through Dynamic Reconfiguration and Decoy Circuits

As Field Programmable Gate Arrays (FPGAs) become more widely used, security concerns have been raised regarding FPGA use for cryptographic, sensitive, or proprietary data. Storing or implementing proprietary code and designs on FPGAs could result in the compromise of sensitive information if the FPGA device was physically relinquished or remotely accessible to adversaries seeking to obtain the information. Although multiple defensive measures have been implemented (and overcome), the possibility exists to create a secure design through the implementation of polymorphic Dynamically Reconfigurable FPGA (DRFPGA) circuits. Using polymorphic DRFPGAs removes the static attributes from their design; thus, substantially increasing the difficulty of successful adversarial reverse-engineering attacks. A variety of dynamically reconfigurable methodologies exist for implementation that challenge designers in the reconfigurable technology field. A Hardware Description Language (HDL) DRFPGA model is presented for use in security applications. The Very High Speed Integrated Circuit HDL (VHSIC) language was chosen to take advantage of its capabilities, which are well suited to the current research. Additionally, algorithms that explicitly support granular autonomous reconfiguration have been developed and implemented on the DRFPGA as a means of protecting its designs. Documented testing validates the reconfiguration results and compares power usage, timing, and area estimates from a conventional and DRFPGA model

Incremental placement for layout driven optimizations on FPGAs

This paper presents an algorithm to update the placement of logic elements when given an incremental netlist change. Specifically, these algorithms are targeted to incrementally place logic elements created by layout-driven circuit restruc-turing techniques. The incremental placement engine as-sumes that the restructuring algorithms provide a list of new logic elements along with preferred locations for each of these new elements. It then tries to shift non-critical logic elements in the original placement out of the way to satisfy the preferred location requests. Our algorithm considers modern FPGA architectures with clustered logic blocks that have numerous architectural constraints. Experiments indi-cate that our technique produces results of extremely high quality. 1

Parallelization of dynamic programming recurrences in computational biology

The rapid growth of biosequence databases over the last decade has led to a performance bottleneck in the applications analyzing them. In particular, over the last five years DNA sequencing capacity of next-generation sequencers has been doubling every six months as costs have plummeted. The data produced by these sequencers is overwhelming traditional compute systems. We believe that in the future compute performance, not sequencing, will become the bottleneck in advancing genome science. In this work, we investigate novel computing platforms to accelerate dynamic programming algorithms, which are popular in bioinformatics workloads. We study algorithm-specific hardware architectures that exploit fine-grained parallelism in dynamic programming kernels using field-programmable gate arrays: FPGAs). We advocate a high-level synthesis approach, using the recurrence equation abstraction to represent dynamic programming and polyhedral analysis to exploit parallelism. We suggest a novel technique within the polyhedral model to optimize for throughput by pipelining independent computations on an array. This design technique improves on the state of the art, which builds latency-optimal arrays. We also suggest a method to dynamically switch between a family of designs using FPGA reconfiguration to achieve a significant performance boost. We have used polyhedral methods to parallelize the Nussinov RNA folding algorithm to build a family of accelerators that can trade resources for parallelism and are between 15-130x faster than a modern dual core CPU implementation. A Zuker RNA folding accelerator we built on a single workstation with four Xilinx Virtex 4 FPGAs outperforms 198 3 GHz Intel Core 2 Duo processors. Furthermore, our design running on a single FPGA is an order of magnitude faster than competing implementations on similar-generation FPGAs and graphics processors. Our work is a step toward the goal of automated synthesis of hardware accelerators for dynamic programming algorithms

Semi-automated Design of High-performance Digital Circuits with Xilinx FPGAs

Tato diplomová práce se zabývá návrhem sekvenčních digitálních obvodů s ohledem na optimalizaci zpoždění. V práci je popsána problematika dvou technik, které jsou běžně používané při optimalizaci – stručně je popsána technika tzv. synchronizace registrů (angl. retiming), větší pozornost je však věnována technice tzv. zřetězení (angl. pipelining). V rámci praktické části byla vypracována forma abstrakce sekvenčních digitálních obvodů pomocí acyklických orientovaných grafů. Obvod je tak přenesen do roviny, ve které je jednodušší jej transformovat. Zároveň je představen nástroj pro polo-automatickou optimalizaci digitálních obvodů vyvíjených v prostředí Xilinx ISE Design Suite využitím techniky zřetězení.This master's thesis deals with sequential digital circuit design optimization concerning delay optimization. Two techniques commonly used for the optimization are described in the thesis – a brief description of the retiming technique and a more in-depth description of the pipelining technique. A form of abstraction of sequential digital circuits using Directed Acyclic Graphs (DAGs) was developed in the practical part of the thesis. This abstraction represents the circuit in a more manageable way for transformations. At the same time, a tool for semi-automatic digital circuit optimization using pipelining is introduced. This tool is compatible with Xilinx ISE Design Suite.