A Hybrid Linear Logic for Constrained Transition Systems with Applications to Molecular Biology

Linear implication can represent state transitions, but real transition systems operate under temporal, stochastic or probabilistic constraints that are not directly representable in ordinary linear logic. We propose a general modal extension of intuitionistic linear logic where logical truth is indexed by constraints and hybrid connectives combine constraint reasoning with logical reasoning. The logic has a focused cut-free sequent calculus that can be used to internalize the rules of particular constrained transition systems; we illustrate this with an adequate encoding of the synchronous stochastic pi-calculus. We also present some preliminary experiments of direct encoding of biological systems in the logic

A Hybrid Linear Logic for Constrained Transition Systems

Linear implication can represent state transitions, but real transition systems operate under temporal, stochastic or probabilistic constraints that are not directly representable in ordinary linear logic. We propose a general modal extension of intuitionistic linear logic where logical truth is indexed by constraints and hybrid connectives combine constraint reasoning with logical reasoning. The logic has a focused cut-free sequent calculus that can be used to internalize the rules of particular constrained transition systems; we illustrate this with an adequate encoding of the synchronous stochastic pi-calculus

A Hybrid Linear Logic for Constrained Transition Systems

International audienceLinear implication can represent state transitions, but real transition systems operate under temporal, stochastic or probabilistic constraints that are not directly representable in ordinary linear logic. We propose a general modal extension of intuitionistic linear logic where logical truth is indexed by constraints and hybrid connectives combine constraint reasoning with logical reasoning. The logic has a focused cut-free sequent calculus that can be used to internalize the rules of particular constrained transition systems; we illustrate this with an adequate encoding of the synchronous stochastic pi-calculus

On the Algebra of Structural Contexts

Article dans revue scientifique avec comité de lecture.We discuss a general way of defining contexts in linear logic, based on the observation that linear universal algebra can be symmetrized by assigning an additional variable to represent the output of a term. We give two approaches to this, a syntactical one based on a new, reversible notion of term, and an algebraic one based on a simple generalization of typed operads. We relate these to each other and to known examples of logical systems, and show new examples, in particular discussing the relationship between intuitionistic and classical systems. We then present a general framework for extracting deductive system from a given theory of contexts, and prove that all these systems have cut-elimination by the means of a generic argument