A Relation Extraction Approach for Clinical Decision Support

In this paper, we investigate how semantic relations between concepts extracted from medical documents can be employed to improve the retrieval of medical literature. Semantic relations explicitly represent relatedness between concepts and carry high informative power that can be leveraged to improve the effectiveness of retrieval functionalities of clinical decision support systems. We present preliminary results and show how relations are able to provide a sizable increase of the precision for several topics, albeit having no impact on others. We then discuss some future directions to minimize the impact of negative results while maximizing the impact of good results.Comment: 4 pages, 1 figure, DTMBio-KMH 2018, in conjunction with ACM 27th Conference on Information and Knowledge Management (CIKM), October 22-26 2018, Lingotto, Turin, Ital

GuavaNet: A deep neural network architecture for automatic sensory evaluation to predict degree of acceptability for Guava by a consumer

This thesis is divided into two parts:Part I: Analysis of Fruits, Vegetables, Cheese and Fish based on Image Processing using Computer Vision and Deep Learning: A Review. It consists of a comprehensive review of image processing, computer vision and deep learning techniques applied to carry out analysis of fruits, vegetables, cheese and fish.This part also serves as a literature review for Part II.Part II: GuavaNet: A deep neural network architecture for automatic sensory evaluation to predict degree of acceptability for Guava by a consumer. This part introduces to an end-to-end deep neural network architecture that can predict the degree of acceptability by the consumer for a guava based on sensory evaluation

Protocol for soil functionality assessment in vineyards

Protocols used by Resolve partners during the project, to assess soil functionality on degraded aeras and evaluate soil restoration after applying recovering practices

Protocols for soil functionality assessment in vineyards

The purpose of this guideline is to describe the methods used during ReSolVe project for soil functionality assessment, so they can be implemented in similar studies. A brief introduction first underlines what are the main functions of soil and why maintaining an optimal soil functionality is particularly of major interest in viticulture. Then the different protocols selected for ReSolVe project and this guideline are presented according to the following classification: - Part I: assessment of soil physical and chemical features; - Part II: assessment of soil biological features (ecosystem service provision and providers); - Part III: assessment of rhizosphere biological features; - Part IV: assessment of grapevine quantitative and qualitative indicators reflecting soil functionality. In each part, global objectives of the monitoring are explained (what is it used for, in which cases…) and the parameters to evaluate are listed with their corresponding methodological sheet. In these sheets, instructions and information are given about: - Materials needed to perform the sampling and the measurement - Sampling procedure - Analysis procedure - Possible interpretations and conclusions that can be drawn (value and meaning of the results, indication of reference values when existing, potential limit of the protocol) - Bibliographic references related to the method described - Additional helpful information where appropriate (ex: template of sampling sheet

Protocol for soil functionality assessment in vineyards

Protocols used by Resolve partners during the project, to assess soil functionality on degraded aeras and evaluate soil restoration after applying recovering practices

Assessment of Parkinson’s disease medication state through automatic speech analysis

Parkinson’s disease (PD) is a progressive degenerative disorder of the central nervous system characterized by motor and nonmotor symptoms. As the disease progresses, patients alternate periods in which motor symptoms are mitigated due to medication intake (ON state) and periods with motor complications (OFF state). The time that patients spend in the OFF condition is currently the main parameter employed to assess pharmacological interventions and to evaluate the efficacy of different active principles. In this work, we present a system that combines automatic speech processing and deep learning techniques to classify the medication state of PD patients by leveraging personal speech-based bio-markers. We devise a speakerdependent approach and investigate the relevance of different acoustic-prosodic feature sets. Results show an accuracy of 90.54% in a test task with mixed speech and an accuracy of 95.27% in a semi-spontaneous speech task. Overall, the experimental assessment shows the potentials of this approach towards the development of reliable, remote daily monitoring and scheduling of medication intake of PD patients.info:eu-repo/semantics/publishedVersio

Automated voice pathology discrimination from audio recordings benefits from phonetic analysis of continuous speech

In this paper we evaluate the hypothesis that automated methods for diagnosis of voice disorders from speech recordings would benefit from contextual information found in continuous speech. Rather than basing a diagnosis on how disorders affect the average acoustic properties of the speech signal, the idea is to exploit the possibility that different disorders will cause different acoustic changes within different phonetic contexts. Any differences in the pattern of effects across contexts would then provide additional information for discrimination of pathologies. We evaluate this approach using two complementary studies: the first uses a short phrase which is automatically annotated using a phonetic transcription, the second uses a long reading passage which is automatically annotated from text. The first study uses a single sentence recorded from 597 speakers in the Saarbrucken Voice Database to discriminate structural from neurogenic disorders. The results show that discrimination performance for these broad pathology classes improves from 59% to 67% unweighted average recall when classifiers are trained for each phone-label and the results fused. Although the phonetic contexts improved discrimination, the overall sensitivity and specificity of the method seems insufficient for clinical application. We hypothesise that this is because of the limited contexts in the speech audio and the heterogeneous nature of the disorders. In the second study we address these issues by processing recordings of a long reading passage obtained from clinical recordings of 60 speakers with either Spasmodic Dysphonia or Vocal fold Paralysis. We show that discrimination performance increases from 80% to 87% unweighted average recall if classifiers are trained for each phone-labelled region and predictions fused. We also show that the sensitivity and specificity of a diagnostic test with this performance is similar to other diagnostic procedures in clinical use. In conclusion, the studies confirm that the exploitation of contextual differences in the way disorders affect speech improves automated diagnostic performance, and that automated methods for phonetic annotation of reading passages are robust enough to extract useful diagnostic information

Intelligent recognition of colorectal cancer combining application of computer-assisted diagnosis with deep learning approaches

The malignancy of the colorectal testing methods has been exposed triumph to decrease the occurrence and death rate; this cancer is the relatively sluggish rising and has an extremely peculiar to develop the premalignant lesions. Now, many patients are not going to colorectal cancer screening, and people who do, are able to diagnose existing tests and screening methods. The most important concept of this motivation for this research idea is to evaluate the recognized data from the immediately available colorectal cancer screening methods. The data provided to laboratory technologists is important in the formulation of appropriate recommendations that will reduce colorectal cancer. With all standard colon cancer tests can be recognized agitatedly, the treatment of colorectal cancer is more efficient. The intelligent computer assisted diagnosis (CAD) is the most powerful technique for recognition of colorectal cancer in recent advances. It is a lot to reduce the level of interference nature has contributed considerably to the advancement of the quality of cancer treatment. To enhance diagnostic accuracy intelligent CAD has a research always active, ongoing with the deep learning and machine learning approaches with the associated convolutional neural network (CNN) scheme